Query= MSMg01no537_p22.b1 MSMg01no537_p22.b1 CHROMAT_FILE:
MSMg01no537_p22.b1 PHD_FILE: MSMg01no537_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:31 2005
(659 letters)
>mm_chr1_108202809_108203867
Length = 1059
Score = 1178 bits (609), Expect = 0.0
Identities = 645/657 (98%), Gaps = 4/657 (0%)
Strand = Plus / Minus
Query: 5 gaattccaccagttacaaaggtatgagcagtcactggagcctggaagaacagtacctggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattccaccagttacaaaggtatgagcagtcactggagcctggaagaacagtacctggt 800
Query: 65 gcaaagaaagtagaagatgtgttttgtctttcttccctccagcttcacttccttccctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gcaaagaaagtagaagatgtgttttgtctttcttccctccagcttcacttccttccctgt 740
Query: 125 taggcgggagtagcaatggggctactcccaacatgctggagagagcaggaggaaggaa-a 183
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 739 taggcgggagtagcaatggggctactcccgacatgctggagagagcaggaggaaggaaca 680
Query: 184 gtaggagggaagaagtggtgggtttgaaacagtagtaatctgaacatgcaacaggtgcat 243
|||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct: 679 -taggagggaagaagcggtgggtttgaaacagtaataatcggaacatgcaacacgtgcat 621
Query: 244 taaacacttctgtagctatgagacagtaaacaaatgagactctgtcgtttgtataagatt 303
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 620 taaacacttctgtagctatgagacagtaaacaaatgagactctgccgtttgtataagact 561
Query: 304 tgagagaaaataaaattaagaggttttaagttgaaatatcttacagtgaaatgaaaatcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgagagaaaataaaattaagaggttttaagttgaaatatcttacagtgaaatgaaaatcc 501
Query: 364 cttcttctgtaacagtca-ccgcagagaataacaaaggtgtttccacaaaggtgaaatag 422
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 cttcttctgtaacagtcatcc-cagagaataacaaaggtatttccacaaaggtgaaatag 442
Query: 423 aacctaaaacatggctgtaactagaaagggattagcctattgttttacacacttaatcag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctaaaacatggctgtaactagaaagggattagcctattgttttacacacttaatcag 382
Query: 483 tttcttatataacaaaacaaatttatacaatccaaaatatttcattttctgcctgaattc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcttatataacaaaacaaatttatacaatccaaaatatttcattttctgcctgaattc 322
Query: 543 agagtagaatttctaagttctcaaaatacctatcatcttatttgtaataagggaaagttc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtagaatttctaagttctcaaaatacctatcatcttatttgtaataagggaaagttc 262
Query: 603 caatatggcatttttttctatactaaaatccatgctacaaacctacgtaagttattt 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatatggcatttttttctatactaaaatccatgctacaaacctacgtaagttattt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_p22.g1 MSMg01no537_p22.g1 CHROMAT_FILE:
MSMg01no537_p22.g1 PHD_FILE: MSMg01no537_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:32 2005
(573 letters)
>mm_chr1_108053168_108054139
Length = 972
Score = 994 bits (514), Expect = 0.0
Identities = 559/574 (97%), Gaps = 3/574 (0%)
Strand = Plus / Plus
Query: 1 ctggatcccaggggttccccccgggtatctcctaagatctcaccagaggtctttggagtc 60
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctggatcccaggggttccccctgggtatctcctaagatctcacaagaggtctttggagtc 260
Query: 61 tctctgtcctttttccacttgaggatctctcttcattgttgatttgggggctttcttgcc 120
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 -ctctgtccttcttccacttgaggatctctcttcattgttgatttggggactttcttgcc 319
Query: 121 cattattgaggtgggatctgtttcctgcatcccttaccttctatttcttggcgtatcctt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cattattgagctgggatctgtttcctgcatcccttaccttctatttcttggcgtatcctt 379
Query: 181 catctctctgaaaaatcttctccagcagcaccctagatatacaattccttacagtaaggc 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 catctctctgaaaaatcttctccagcagcactctagatatacaattccttacagtaaggc 439
Query: 241 atggggcgtttgtgtattcaaaaaactattttaatctacatgaattccttgtcttagtta 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 atggggcgtttgtgtattcaaaaaactatttcaatctacatgaattccttgtcttagtta 499
Query: 301 gggtttccatcgctgtggagagacaccatgaccaaggcaagacttataaggacatttaat 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggatttccatcgctgtggagagacaccatgaccaaggcaagacttataaggacatttaat 559
Query: 361 tgtggctggcttatgggcttaaaggtttagtccattcttatcat-ggctggaagcttggc 419
||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||
Sbjct: 560 tgtggctggcttatgggcttagaggtttagtccattatta-cattggctggaagcttggc 618
Query: 420 agagtgcaggcaggcatggagctggagacggaactgagtattctacattttgatcccact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agagtgcaggcaggcatggagctggagacggaactgagtattctacattttgatcccact 678
Query: 480 gcatccagaagactgttttccatgcagctaggatgagggtctcaatgcccactctgacag 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 679 gcatccagaagactgttttccatgcaggtaggatgagggtctcaatgcccactctgacag 738
Query: 540 tgacacattctcttcaacaaggtcacacctccta 573
|||||||||| |||||||||||||||||||||||
Sbjct: 739 tgacacattcccttcaacaaggtcacacctccta 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space: 541606
Effective search space used: 541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
