Query= MSMg01no538_a06.b1 MSMg01no538_a06.b1 CHROMAT_FILE:
MSMg01no538_a06.b1 PHD_FILE: MSMg01no538_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:33 2005
(639 letters)
>mm_chr1_25008218_25009255
Length = 1038
Score = 1214 bits (628), Expect = 0.0
Identities = 634/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatttttattaaaaatatgttactattgctccaactaatttataaactacctat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatttttattaaaaatatgttactattgctccaactaatttataaactacctat 263
Query: 64 aaaatccaacgagtaaatccaaagaaaaatctccagttttggagtgtaatttaacgacct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaatccaacgagtaaatccaaagaaaaatctccagttttggagtgtaatttaacgacct 323
Query: 124 tttttttttccctcagaaatcaatttaatgggatattgctggctcacacttatcttttcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttttttccctcagaaatcaatttaatgggatattgctggctcacacttatcttttcc 383
Query: 184 cgagactattataaagaaagaaaacctatttgtagtgggtacttctggcaataagtttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgagactattataaagaaagaaaacctatttgtagtgggtacttctggcaataagtttaa 443
Query: 244 ttaatataaaacagcattaattcaacggttggactatggagctggcaacatccatgtctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaatataaaacagcattaattcaacggttggactatggagctggcaacatccatgtctc 503
Query: 304 cccctcccctgccaaagtcctcaccctggaagggtgtgtgtcagctacttctgaattggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccctcccctgccaaagtcctcaccctggaagggtgtgtgtcagctacttctgaattggt 563
Query: 364 ggaatttcctgtcaagctttattgaagaaagtttaatttccttcttctttttttttaatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaatttcctgtcaagctttattgaagaaagtttaatttccttcttctttttttttaatg 623
Query: 424 cccttttcccatttattcaagatgattacacccaaaccttttaggaactgtaaaacctca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccttttcccatttattcaagatgattacacccaaaccttttaggaactgtaaaacctca 683
Query: 484 tggccaccaccttaatcacacactgatgttacttgtcattgattgtgatgaacagttatg 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggccaccaccttaaccacacactgatgttacttgtcattgattgtgatgaacagttatg 743
Query: 544 attttcaccgtgctgaagcacgtctcacttctgacctgaaatttctgtttttttgttgtt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attttcaccgtgctgaagcacgtctcacttctgacctgaaatttctgtttttttgttgtt 803
Query: 604 ttttttttcaattgcatacaggaagtgcaatggtca 639
||||||| ||||||||||||||||||||||||||||
Sbjct: 804 ttttttt-caattgcatacaggaagtgcaatggtca 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_a06.g1 MSMg01no538_a06.g1 CHROMAT_FILE:
MSMg01no538_a06.g1 PHD_FILE: MSMg01no538_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:33 2005
(616 letters)
>mm_chr1_25192167_25193182
Length = 1016
Score = 1176 bits (608), Expect = 0.0
Identities = 614/616 (99%)
Strand = Plus / Minus
Query: 1 agaatttctgtagatgcagaattcgaggagactgtagacatcaagagcagataggactaa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 742 agaatttctgtagatgcagaattcaaggagactgtagacatcaagagcagataggactaa 683
Query: 61 gtcataaagaacaagatgtgtagcttaaccttttgagaaatttgaccacaattggaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtcataaagaacaagatgtgtagcttaaccttttgagaaatttgaccacaattggaaaca 623
Query: 121 aacagtaataaagaggagctttgattagccaaagagaggtatttcaacacagttatttct 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 aacagtaataaagaggagctttgattggccaaagagaggtatttcaacacagttatttct 563
Query: 181 aggctaatatgttatccccatatgctagctggagagtgtaaagttgaccaatgtataact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggctaatatgttatccccatatgctagctggagagtgtaaagttgaccaatgtataact 503
Query: 241 aagcataattactatttcttttgatagaaatcagagtagtgtttattcttagaataacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagcataattactatttcttttgatagaaatcagagtagtgtttattcttagaataacaa 443
Query: 301 taatgactggcaagcaggtaatgttatacattttgatgtattttgtagttatggaggtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taatgactggcaagcaggtaatgttatacattttgatgtattttgtagttatggaggtga 383
Query: 361 attcatttacaatctgtctggctgatgtcaataagaatatgacttgtaaaatatattaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attcatttacaatctgtctggctgatgtcaataagaatatgacttgtaaaatatattaag 323
Query: 421 ctttaccacacttcataacataacaattaaaaattcacccttcccccccaaaagaatgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctttaccacacttcataacataacaattaaaaattcacccttcccccccaaaagaatgat 263
Query: 481 tgttatgtatcaaattttcgacatgtgtgatgttgggggtgtttgtttgtttccttattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgttatgtatcaaattttcgacatgtgtgatgttgggggtgtttgtttgtttccttattg 203
Query: 541 tgtgtttgttttgagagaagggtttctttgtgtagttctgagacttgctctacagatcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtgtttgttttgagagaagggtttctttgtgtagttctgagacttgctctacagatcag 143
Query: 601 gctggcctcaaactca 616
||||||||||||||||
Sbjct: 142 gctggcctcaaactca 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
