XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
GTTTCTTTATAACCCACTTTTTAATAAGGTTATTTAACTTTAAGTTTCAA
TGTATCTGTGGAGGTCATTGATCTGCTTGGACAACAAGAGAAGAATGGAT
CTGTTTGCATTCCTCTACATGCTGACCAACAGTTGAACCAGCACCATTTA
TTGAAAATACTGTCTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAGA
TCAAGTGACCATAGGTGTGTGGGTTCATTTTTTGGACTTCAATTCTATTC
CCTTGGTCTACTTTTATGTCACCATACCAATACCGTGCAGTTTTTATCAC
CGTTGCTCTGTAGTACAGCTTGACATCAGGGATGTTGATTCCCCCGGAAA
TTCTTTTATTGTTCAGAATAGTTTTCATTATTAACAGTCTGGCAGTTCCT
CAGAAAATCGGACATAGTATTACCTGAGGACTCAGCTATACCACTCCTGG
GCATATACCGAAAAGATGCTCCAACAAATAACAACAATAGGTAGACACAT
GTTCCATTATGTTCATAGCAATCTTATTTATAGTAACCAGAAGGTGGAAA
CAACCCAGATGTCCCTCAACAGAGAAATAGATACAAAAAATGTGGTACAT
TTATAAGATGGAGTACTATTCAGCTATTAAAAGCAATGAATTCATGAAAT
TTTTAGCCAAATGGATGGAACTAGAAAATATCATCTTGAGTTAAG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTCAGCCACACTGAAGCTACCCTCAAGAGTCACCTTC
TCTCTAGAATTTCCTAGGCCAAAACCCATAGCATTCAGGTCCTTCAGAGT
TAAACGCAGTGGCACTGCCTTTCTACTAATGAGAATTTTAGTGGCCACTC
AAGTTTGGAAGAGATTGAAACACATGATGGTGTCTTAAGAGCTTTGATAA
TGTACACTCTTCACAAGGCATATTGATAGAAATGTGGGTCTTTGGAAGGG
AAGCTAAGGGGCATTCAGGAAGGCTTTATGTGTAGCTGGTACATGTCCCC
ACATCCTATGTCCTGAGAAAACGTCTCCCTGAGTAGGAGGTACATGGGGT
ATCTTTACTATGATGGGACAACATATGAAACGCTTGCTTTTTAGAGTCTG
ATAAATATATCAGTGACCACAGTATTTTTTGTCTCTATGGTATGAACCAC
TAGGGTATCTATACTTCTTACAAATAAGCAACTATCTGCAGAAGTACTTT
TCTGGTGTTTTGTTACTGCCTGCCGAACCATGGAGGAAAGCCAGCCTTAG
CCCAATGTTTTGGAATGAGGACAGACCCAAAATTATGTGCAAATGTAGAG
AAACCCTTTTTAATGGAGGGACTGCTGTTGGCCTTGTAGAAACAGAGTGG
AATGTTATTAACCCTTTAGGGTAGTGTGGCATTCATGAGGAGGCTCTTG

Query= MSMg01no538_a19.g1 MSMg01no538_a19.g1 CHROMAT_FILE:
MSMg01no538_a19.g1 PHD_FILE: MSMg01no538_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:36 2005
         (616 letters)



>mm_chr1_20541744_20542759
          Length = 1016

 Score = 1106 bits (572), Expect = 0.0
 Identities = 605/616 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcagccacactgaagctaccctcaagagtcaccttctctctagaatttcctaggccaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 816 tgtcagccacactgaagctaccctgaagagtcaccttctctctagaatttcctaggccaa 757

                                                                       
Query: 61  aacccatagcattcaggtccttcagagttaaacgcagtggcactgcctttctactaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aacccatagcattcaggtccttcagagttaaacgcagtggcactgcctttctactaatga 697

                                                                       
Query: 121 gaattttagtggccactcaagtttggaagagattgaaacacatgatggtgtcttaagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaattttagtggccactcaagtttggaagagattgaaacacatgatggtgtcttaagagc 637

                                                                       
Query: 181 tttgataatgtacactcttcacaaggcatattgatagaaatgtgggtctttggaagggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tttgataatgtacactcttcacaaggcatattgatagaaatgtgggtctttggaagggaa 577

                                                                       
Query: 241 gctaaggggcattcaggaaggctttatgtgtagctggtacatgtccccacatcctatgtc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 576 gctaagggacattcaggaaggctttatgtgtagctggtacatgtccccaaatcctatttc 517

                                                                       
Query: 301 ctgagaaaacgtctccctgagtaggaggtacatggggtatctttactatgatgggacaac 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctgagaaaacatctccctgagtaggaggtacatggggtatctttactatgatgggacaac 457

                                                                       
Query: 361 atatgaaacgcttgctttttagagtctgataaatatatcagtgaccacagtattttttgt 420
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 456 atatgaaaagcttgctttttagagtctgataaatatatcagtgtccacagtattttttgt 397

                                                                       
Query: 421 ctctatggtatgaaccactagggtatctatacttcttacaaataagcaactatctgcaga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 ctctatggtatgaaccactagggtatctatacttcttacaaataagcaactatctggaga 337

                                                                       
Query: 481 agtacttttctggtgttttgttactgcctgccgaaccatggaggaaagccagccttagcc 540
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 336 agtatttttctggtgttttgttactacctgccgaaccatggaggaaagccagccttagcc 277

                                                                       
Query: 541 caatgttttggaatgaggacagacccaaaattatgtgcaaatgtagagaaacccttttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 caatgttttggaatgaggacagacccaaaattatgtgcaaatgtagagaaaccgttttta 217

                           
Query: 601 atggagggactgctgt 616
           ||||||||||||||||
Sbjct: 216 atggagggactgctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)