BAC Information

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BAC

Clone NameMSMg01-538E22
Chromosome1 (Build37)
Map Location 175,246,627 - 175,382,175
singlet/doubletdoublet
Overlap geneDarc, Cadm3
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538E22.T7 (MSMg01no538_e22.b1)MSMg01-538E22.TJ (MSMg01no538_e22.g1)
ACCAG605068AG605069
length756758
length of high quality
(start - end)		582 (35 - 616)575 (65 - 639)
definitionCHROMAT_FILE: MSMg01no538_e22.b1 PHD_FILE: MSMg01no538_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:55 2005CHROMAT_FILE: MSMg01no538_e22.g1 PHD_FILE: MSMg01no538_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,246,627 - 175,247,204)(175,381,601 - 175,382,175)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTC
CACCATATGATGACAGGAAAAAAATCAACAAACTCTTTCTGTTACTTTAT
TATGGAATCTGAAATTTCCGAGTCTTGGTGTGACCAAGATTGTTGCTTAG
GTGAGTCAAAACAGATGCTCTATAATACAAAAGATCAAATCCCAGAGATT
TAACAAAACACATACACACACGCACACACACACTACCACCACCACCACCA
GCAACAACAACAACAACACAACCAGGCTATCAGTTTGAGAGAGACAAGGA
AAACATGGAAAGAGTTGGGGAGAGAAAAGGGAAAGGGAAAATGATGTAAC
TGTGTTTTAATTTAAAACATATATTAAGTAAGGAAGAATAAAGTGGACTT
CTTCATAAGCAATCTGAGGCATTTGGGTAAGGAATGTCCTGTCCTGAGCC
ACACTCCGTGAAATTGGTACCCTGAATCACTAAGAATGCCTTTGCATAGT
ATGGAAGCCCTGACTAAAATAAACAGACAACATAAAAATGAAAAAAAAAA
GAATAGTTGATATAATTTCAAGATAGAAACCAGGATTCTGGCTGTGACTC
CAAGTTGCTAAGAGATAAGAATTGTCATTGATTCAACTGTGGATTGGCTG
ACTAAAGAAGACATAGCTGGAAGCATCTGCAGTATTCCAGAAAGCCCTGA
TGGAATGGCCTCTCCAGCCTTCCTCACTTCAAGCAACCAACTCTCCTGTC
AGCCAC

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATCCCAGGCCTTAGTCTTTAAACTCAGTACGAGGCT
ATCATAGCGAAGTATCACTGCTTGGAAGAATTCTATAACCCCTTCCCCCA
GGCTAGACTGAGCAACTGGAATTGTGTAAGTCAGTCTGCATGCTCACTTC
CTCTATCTCTTCTCCTTGGATCTGGGTCAGACAGAAGGATGAGCAGAAAG
GTCTCCACCCACAGGCAACATGGCCCAAATCTAGCCCAGAATTCTGCTCA
CTGCAGTGGGAAGTAGCAAGAAACAGAAAGTAACGCCTTTTAGACCCAGG
CCACATCTCATAGATGAAACCTCCCTCCCGACATACACTAGAACTAAGCA
ATTGCCTACATGCCAGTGGGACTGTCTCAAGCTTGCTTAGATCGTTACCA
GCCTGGCAGTGAGAAAGGGACACACACCCTACTCTGACCACATATTTTCT
CTGCCTGTGAGTCCCAGGTGTGACACAGGTTAGTGTCGCCCTTGGTGGAC
CCTAGATTTGGGTATCAGCTCTCTTCAGGTTAGTGTTATCAGACAGATCA
TCAAGCACAAATTATCAAGATCATTTGACATGACTTACCACCAAGCAGGG
ACTTATACCCTACTGGGATGTCATATTTGGGCCTGTTTGTCTACTGGGAT
GGCATAGACCTGGGTGCACTCACCATGAAATTCCGAAGAAATTCGCAAAG
AGAAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_e22.b1 MSMg01no538_e22.b1 CHROMAT_FILE:
MSMg01no538_e22.b1 PHD_FILE: MSMg01no538_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:55 2005
         (582 letters)



>mm_chr1_175246423_175247404
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 578/578 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtccaccatatgatgacaggaaaaaaatcaacaaactctttctgttacttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtccaccatatgatgacaggaaaaaaatcaacaaactctttctgttacttt 264

                                                                       
Query: 65  attatggaatctgaaatttccgagtcttggtgtgaccaagattgttgcttaggtgagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attatggaatctgaaatttccgagtcttggtgtgaccaagattgttgcttaggtgagtca 324

                                                                       
Query: 125 aaacagatgctctataatacaaaagatcaaatcccagagatttaacaaaacacatacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacagatgctctataatacaaaagatcaaatcccagagatttaacaaaacacatacaca 384

                                                                       
Query: 185 cacgcacacacacactaccaccaccaccaccagcaacaacaacaacaacacaaccaggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacgcacacacacactaccaccaccaccaccagcaacaacaacaacaacacaaccaggct 444

                                                                       
Query: 245 atcagtttgagagagacaaggaaaacatggaaagagttggggagagaaaagggaaaggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcagtttgagagagacaaggaaaacatggaaagagttggggagagaaaagggaaaggga 504

                                                                       
Query: 305 aaatgatgtaactgtgttttaatttaaaacatatattaagtaaggaagaataaagtggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgatgtaactgtgttttaatttaaaacatatattaagtaaggaagaataaagtggac 564

                                                                       
Query: 365 ttcttcataagcaatctgaggcatttgggtaaggaatgtcctgtcctgagccacactccg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcttcataagcaatctgaggcatttgggtaaggaatgtcctgtcctgagccacactccg 624

                                                                       
Query: 425 tgaaattggtaccctgaatcactaagaatgcctttgcatagtatggaagccctgactaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaaattggtaccctgaatcactaagaatgcctttgcatagtatggaagccctgactaaa 684

                                                                       
Query: 485 ataaacagacaacataaaaatgaaaaaaaaaagaatagttgatataatttcaagatagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataaacagacaacataaaaatgaaaaaaaaaagaatagttgatataatttcaagatagaa 744

                                                 
Query: 545 accaggattctggctgtgactccaagttgctaagagat 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 accaggattctggctgtgactccaagttgctaagagat 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_e22.g1 MSMg01no538_e22.g1 CHROMAT_FILE:
MSMg01no538_e22.g1 PHD_FILE: MSMg01no538_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:55 2005
         (575 letters)



>mm_chr1_175381401_175382375
          Length = 975

 Score = 1112 bits (575), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcccaggccttagtctttaaactcagtacgaggctatcatagcgaagtatcactgcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 atcccaggccttagtctttaaactcagtacgaggctatcatagcgaagtatcactgcttg 716

                                                                       
Query: 61  gaagaattctataaccccttcccccaggctagactgagcaactggaattgtgtaagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaagaattctataaccccttcccccaggctagactgagcaactggaattgtgtaagtcag 656

                                                                       
Query: 121 tctgcatgctcacttcctctatctcttctccttggatctgggtcagacagaaggatgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tctgcatgctcacttcctctatctcttctccttggatctgggtcagacagaaggatgagc 596

                                                                       
Query: 181 agaaaggtctccacccacaggcaacatggcccaaatctagcccagaattctgctcactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agaaaggtctccacccacaggcaacatggcccaaatctagcccagaattctgctcactgc 536

                                                                       
Query: 241 agtgggaagtagcaagaaacagaaagtaacgccttttagacccaggccacatctcataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtgggaagtagcaagaaacagaaagtaacgccttttagacccaggccacatctcataga 476

                                                                       
Query: 301 tgaaacctccctcccgacatacactagaactaagcaattgcctacatgccagtgggactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgaaacctccctcccgacatacactagaactaagcaattgcctacatgccagtgggactg 416

                                                                       
Query: 361 tctcaagcttgcttagatcgttaccagcctggcagtgagaaagggacacacaccctactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctcaagcttgcttagatcgttaccagcctggcagtgagaaagggacacacaccctactc 356

                                                                       
Query: 421 tgaccacatattttctctgcctgtgagtcccaggtgtgacacaggttagtgtcgcccttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgaccacatattttctctgcctgtgagtcccaggtgtgacacaggttagtgtcgcccttg 296

                                                                       
Query: 481 gtggaccctagatttgggtatcagctctcttcaggttagtgttatcagacagatcatcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtggaccctagatttgggtatcagctctcttcaggttagtgttatcagacagatcatcaa 236

                                              
Query: 541 gcacaaattatcaagatcatttgacatgacttacc 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gcacaaattatcaagatcatttgacatgacttacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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