Query= MSMg01no538_g14.b1 MSMg01no538_g14.b1 CHROMAT_FILE:
MSMg01no538_g14.b1 PHD_FILE: MSMg01no538_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:03 2005
(484 letters)
>mm_chr1_186770958_186771841
Length = 884
Score = 890 bits (460), Expect = 0.0
Identities = 478/484 (98%)
Strand = Plus / Plus
Query: 1 cccagagctagctgaacttgtccagtaaaccagagaaggttgagagaatcatagttatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagagctagctgaacttgtccagtaaaccagagaaggttgagagaatcatagttatag 260
Query: 61 agttaagtccagattaaaccaacggactcccagctggccctctgacattaggagacatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaagtccagattaaaccaacggactcccagctggccctctgacattaggagacatag 320
Query: 121 gctactggtttaagctactgaatactggagtttgagtttttgttacatagcaatgtcaat 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gctactggtttaagctactgaatactggagtttgagtttttgctacatagcaatgtcaat 380
Query: 181 ggatacataaacttgccactacttcaattaaaaaattaatttttgtattactgaggagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatacataaacttgccactacttcaattaaaaaattaatttttgtattactgaggagtg 440
Query: 241 aacccaagaccctgactctaacagagcactgctctactgctgaggtaaatccttgtccct 300
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aacccaagaccctgattctaacagagcactgctctactgctgagctaaatccttgtccct 500
Query: 301 atcagtatcctataaaaaagaagtaaagataagggaagcacttctgaacagttaaaagtc 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 atcagtatcctataaaaaagaagtaaagataagggaagcgcttctgaacagttaaaagtc 560
Query: 361 ttttaagacttgttcaaaccctagggaaattaaaaaagaaaagtaagattggtagacaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaagacttgttcaaaccctagggaaattaaaaaagaaaagtaagattggtagacaat 620
Query: 421 caatcccttaaggagacatttttgtttggcataagctgtgtaggggcagaactcttgaat 480
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 caatcccttaaggagacatctttgtttggcataagctgcgtaggggcagaactcttgaat 680
Query: 481 attt 484
||||
Sbjct: 681 attt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_g14.g1 MSMg01no538_g14.g1 CHROMAT_FILE:
MSMg01no538_g14.g1 PHD_FILE: MSMg01no538_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:03 2005
(450 letters)
>mm_chr1_186941336_186942186
Length = 851
Score = 818 bits (423), Expect = 0.0
Identities = 444/451 (98%), Gaps = 1/451 (0%)
Strand = Plus / Minus
Query: 1 tctgagctggtggtaaaggagtcgcttaggtgctgaagaagagtgagggtttgtggatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctgagctggtggtaaaggagtcgcttaggtgctgaagaagagtgagggtttgtggatgt 592
Query: 61 atctttaattccctaagacctcactttaccctgatgctcttctggactgcaacccgagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atctttaattccctaagacctcactttaccctgatgctcttctggactgcaacccgagct 532
Query: 121 gatgctcacaacagttcatccatttcaccctgttgccctcgtcttccgcacttgcttctg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 531 gatgctcacaacagttcatccatttcaccctgttgccctagtcttccgcacttgcttctg 472
Query: 181 acgaccagtttccatggcaaccagagcatctccagtctgccacctcctaactgaagggat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 471 acgaccagtttccatggcaaccagagcatctccagtctgccacctcctaactgaagagat 412
Query: 241 ggaaaggaggaagggaatataaggtaagagatgctcacctcaacgcacaaggttaaaagg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 411 ggaaaggaggaagtgaatataaggtaagagatgctcacctcaacgcacaagtttaaaagg 352
Query: 301 aatttccagttaaacaccagtaatcatttaggaaaagcatccagagtgagtgatcaatgc 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aatttccagttaaagaccagtaatcatttaggaaaagcatccagagtgagtgatcaatgc 292
Query: 361 ttacctcatttctgatggtgagtaatagtctcttctttggtgtctgtccgagaatctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttacctcatttctgatggtgagtaatagtctcttctttggtgtctgtccgagaatctctc 232
Query: 421 tc-ttttttccttaattgattttaacttcta 450
|| ||||||||||||||||||| ||||||||
Sbjct: 231 tccttttttccttaattgatttgaacttcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space: 370040
Effective search space used: 370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
