BAC Information

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BAC

Clone NameMSMg01-538I03
Chromosome1 (Build37)
Map Location 172,488,326 - 172,488,861
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538I03.T7 (MSMg01no538_i03.b1)MSMg01-538I03.TJ (MSMg01no538_i03.g1)
ACCAG605219AG605220
length745742
length of high quality
(start - end)
540 (38 - 577)43 (64 - 106)
definitionCHROMAT_FILE: MSMg01no538_i03.b1 PHD_FILE: MSMg01no538_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:10 2005CHROMAT_FILE: MSMg01no538_i03.g1 PHD_FILE: MSMg01no538_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
AGTTGCGCACAATTCTGTGAAAAGCTTCCTGAACTCCAGAGCACTGGGTT
TGAGGATATCATCAATATGAAAACTTCCTTCATCTATAGTTTAATATTCT
TCTGGGTCCCCCGGCTCTGCTCACCTCCTTGGACACATTCAAAGCTCTCT
GGCTGCCATGCCTGGTAGGACAAGCCTAGAATCCCAGCTACTCAGGAGGC
TGAGATAGAAGGATCACAATTTTAAGACTCACTCAAAGATACACAGGGAA
TTCAAGGATAGTCTACCCAACTTAGAAAGAACTTGTCTTAAAAACCAAAC
CAAAAAAGAGTGTCTGAGCATTCAGTAGCAGAATGTGAGAGGCCCTAAGT
TCAATTAGCTGTACTGAAAAAATAGGGGTGGAGTAGGATGGGGATAGCTA
GTAACTATGTATCCAGACAGACAGTGGGCCATGAATGACTTAGTGCAAAA
CTCTAAACAGCACGCTAGAGGCTCAACAACAACAACAACACACACACACA
CACAAGCATCCCTCCCTACATGTGACAACATATAGAATTTAACTGTCTTG
ATGAACACTAATCAATGGGGGCAGGGCAGTGGGCAGTGAAAGGATTAAAT
CCCAGCTGTTCTGAGATCACAGCCCCTCCAAAGACCTGAGAAAACTGGGG
AAGGAGAAAACACCCACCAGGACCTTGAAGTTTGCACGCAGCTGG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTGCCGCAGTCCATCCTGATTGGCTCTCGGGTGATT
TTCAGACATAGANNCCCTGTTTGTCCCGGGGGCTGGTCCTCTAATGGGTG
CCAAGGAGAAGATACCAAATACATGGAGTACCTTTAGGAGTAGCCATTTT
GTGGGGGAGGTGGGCTACCCTGTGGCCATGTCCTTCCTGCCTGTGAAGCA
GCTCAACACGAGGATGTGACTGTGGCTGTGGACAGAGGCAGCACACGCCT
TCCCTGATGCTGATCTTGTTGAAACACGATTAAAAATCTGGCGGTGAATC
CCAGTGTGACCGGGGGCCCTTAAAAACCAAAAGACTCTTAATAAAGGGGC
CCCCCGTTTTGGCCTAAGGGGGTTGAAGGGCCCCCTCCCCCCCCCAACCG
GGGAAATAAACATGGGTGGGGGCATTAAATTCTCCCTCCTCTCTTTTTTT
GATNTCNTCNNNCCCNNCCCCCCCCCCCTTTTTCTTCGCTCTTTTCCCCT
TTTTTTTTTCTCCCCTTTTGTCTTGGTCCTGTTGTTCCCCTTATTTTTTC
ATTCGCCGCCGTTCTGTTTTTCCCACTTTTTCCCCATATTTTTTTTGNCT
GGGCCTTTTCCCTCCCTTTTTTTCTATTTTTGCGTCTTTTTCCTGACTCC
TGTCCAAATCTCACCCTTTATTTTTTATGACGCCGTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_i03.b1 MSMg01no538_i03.b1 CHROMAT_FILE:
MSMg01no538_i03.b1 PHD_FILE: MSMg01no538_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:10 2005
         (540 letters)



>mm_chr1_172488123_172489061
          Length = 939

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggagttgcgcacaattctgtgaaaagcttcctgaactccagagcactgggtt 63
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggagatg-gcacaattctgtgaaaagcttcctgaactccagagcactgggtt 262

                                                                       
Query: 64  tgaggatatcatcaatatgaaaacttccttcatctatagtttaatattcttctgggtccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgaggatatcatcaatatgaaaacttccttcatctatagtttaatattcttctgggtccc 322

                                                                       
Query: 124 ccggctctgctcacctccttggacacattcaaagctctctggctgccatgcctggtagga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccggctctgctcacctccttggacacattcaaagctctctggctgccatgcctggtagga 382

                                                                       
Query: 184 caagcctagaatcccagctactcaggaggctgagatagaaggatcacaattttaagactc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caagcctagaatcccagctactcaggaggctgagatagaaggatcacaattttaagactc 442

                                                                       
Query: 244 actcaaagatacacagggaattcaaggatagtctacccaacttagaaagaacttgtctta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actcaaagatacacagggaattcaaggatagtctacccaacttagaaagaacttgtctta 502

                                                                       
Query: 304 aaaaccaaaccaaaaaagagtgtctgagcattcagtagcagaatgtgagaggccctaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaaccaaaccaaaaaagagtgtctgagcattcagtagcagaatgtgagaggccctaagt 562

                                                                       
Query: 364 tcaattagctgtactgaaaaaataggggtggagtaggatggggatagctagtaactatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcaattagctgtactgaaaaaataggggtggagtaggatggggatagctagtaactatgt 622

                                                                       
Query: 424 atccagacagacagtgggccatgaatgacttagtgcaaaactctaaacagcacgctagag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atccagacagacagtgggccatgaatgacttagtgcaaaactctaaacagcacgctagag 682

                                                                    
Query: 484 gctcaacaacaacaacaacacacacacacacacaagcatccctccctacatgtgaca 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gctcaacaacaacaacaacacacacacacacacaagcatccctccctacatgtgaca 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space:   492370
Effective search space used:   492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)