XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAT
ACTTCAGTGGGATCATCTGAACCCATTGACTCCCACATGGCCAGCGGGCT
TTTGTGTATGTCAGACAACTTGTCTACCACAAAGATCCACCCCTAACCCT
TTAAAAAAAAACTTGTACTTACTTTGAGGTAAGGGCTAGCGTTGAACTCA
CCCGTGGTCCTTCTGCCTATGCCTCTCTGGAGGCCTCCACCACCAAGCCC
CGAGCCCATCTTCAAACACATTTGGATATTTTGATGTCTGGGGCACTGCT
GACCCTGGACAGACCTCCAAATCCCAGAAATTGCCAAACTCATGAAAGCA
AAGGACTTGACTTTTACATTTGTATGTGTGTGTGTGTGTGTGTCTATGTG
TAGGCCAGAGGTTGACATCAAGTGTGTCTTCCTCTATCATTTCCTTGCCT
TAGCCTCTTGCTGAGCCTGGAGCTCACTGATTATCTACACCGATGGCCAG
CTAGCTCCATAAATCCTCAGGCTTCTGCCTCCTCTATGCTAATATTATAA
ACCTTGCCTGGCTTTTGACCGAGGTGCAGGGGAGAAAGCACGTTACCAGG
TCAAACCTGCCTTCCACAGGAACCAATACAAGGTCACTGTGTTCCACATT
CTCTGCCAGACTCATGCTCAGGACCAACAATCACCCACAGCCAGGCAACA
ATGAGAGCCAGCTTGGTGGTTAATCAACACGCCCA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCATTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGTCAGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTTTGGTTTTATGTGGAGT
TCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATC
AATTCGCATTCTTCTACATGATAACCACCAGTTCTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAG
ATCAAGTGACCATAGGTGTGTGTGTTCATTTCTGGGTCTTCAATTCTATT
CCATTGATCTACTTGTCTGTCACTATATTAGTACCATGCAGTTTTTATCA
TAATTGCTCTGTAGTACAGCTTTAGGCCAGGCATGGTGATTCCACCAGAG
GTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCG

Query= MSMg01no538_j01.b1 MSMg01no538_j01.b1 CHROMAT_FILE:
MSMg01no538_j01.b1 PHD_FILE: MSMg01no538_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:15 2005
         (670 letters)



>mm_chr1_128887879_128888948
          Length = 1070

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/443 (98%), Gaps = 4/443 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttatacttcagtgggatcatctgaacccattgactcccacatggccagcggg 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaattctttagacttcagtgggatcatctgaacccattgactcccacatggccagcggg 380

                                                                       
Query: 64  cttttgtgtatgtcagacaacttgtctaccacaaagatccacccctaaccctttaaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttttgtgtatgtcagacaacttgtctaccacaaagatccacccctaaccctttaaaaaa 320

                                                                       
Query: 124 aaacttgtacttactttgaggtaagggctagcgttgaactcacccgtggtccttctgcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaacttgtacttactttgaggtaagggctagcgttgaactcacccgtggtccttctgcct 260

                                                                       
Query: 184 atgcctctctggaggcctccaccaccaagccccgagcccatcttcaaacacatttggata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atgcctctctggaggcctccaccaccaagccccgagcccatcttcaaacacatttggata 200

                                                                       
Query: 244 ttttgatgtctggggcactgctgaccctggacagacctccaaatcccagaaattgccaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttttgatgtctggggcactgctgaccctggacagacctccaaatcccagaaattgccaaa 140

                                                                       
Query: 304 ctcatgaaagcaaaggacttgacttttacatttgtatgtgtgtgtgtgtgtgtgtctatg 363
           |||||||||||||||||||||||||||||| ||||||||||||||||||||    |||||
Sbjct: 139 ctcatgaaagcaaaggacttgacttttacacttgtatgtgtgtgtgtgtgt----ctatg 84

                                                                       
Query: 364 tgtaggccagaggttgacatcaagtgtgtcttcctctatcatttccttgccttagcctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tgtaggccagaggttgacatcaagtgtgtcttcctctatcatttccttgccttagcctct 24

                                  
Query: 424 tgctgagcctggagctcactgat 446
           |||||||||||||||||||||||
Sbjct: 23  tgctgagcctggagctcactgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)