Query= MSMg01no538_n10.b1 MSMg01no538_n10.b1 CHROMAT_FILE:
MSMg01no538_n10.b1 PHD_FILE: MSMg01no538_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:35 2005
(671 letters)
>mm_chr1_133063300_133064370
Length = 1071
Score = 1178 bits (609), Expect = 0.0
Identities = 651/667 (97%), Gaps = 4/667 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatattaggcgcacgcctttaatcccagcacttgagaggcagaggcaggtggac 64
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 209 gaattcaataaaaggcgcacgcctttaatcccagcacttgggaggcagaggcaggtggat 268
Query: 65 ttctgagttcaaggccagcctggtctacaaagtgatttccagggcagccagggctacaca 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 ttctgagttcaaggccagcctggtctacaaagtgatttccagggcagccaaggctacaca 328
Query: 125 gagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaagaattcaataaaagagtta 184
|||||||||||||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct: 329 gagaaaccctgtcttggaacaccaaaaaaaaaaaaaa----gaattcaataaaagagtta 384
Query: 185 cttaaggctggggagttgtcttcaaaggaaagattcttgatacttttttctgtagaacca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaaggctggggagttgtcttcaaaggaaagattcttgatacttttttctgtagaacca 444
Query: 245 tagctgacaataattcatattgggacccagcaaagtgtgccaagtccatgcagattatcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagctgacaataattcatattgggacccagcaaagtgtgccaagtccatgcagattatcc 504
Query: 305 tgccacgtgtctctgagtctactggagcctcgtctagtaaagggttagggtgttctgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccacgtgtctctgagtctactggagcctcgtctagtaaagggttagggtgttctgtct 564
Query: 365 gtttttgtgttttgttttgtttgttttgagacgagctcaccacatagcttaggttggcca 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 gtttttgtgttttgttttgtttgttttgagacgagctcaccacatagcttaagttggcca 624
Query: 425 tgaatttgtgccgctgggtgcaggcctgagctgctgtaaagctgagtgttctatgcagat 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 tgaatttgtgccgctgggtgcaggcctgagctgctgtagagctgagtgttctatgcagat 684
Query: 485 acattattatgattacagattgctgggaggtgctcagtgggtgaggcataaacgcccaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acattattatgattacagattgctgggaggtgctcagtgggtgaggcataaacgcccaag 744
Query: 545 taattccagaacccaggtaatgccaggggcacctctgtaatcctagtcctcctatgattg 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 745 taattccagaacccaggtaatgccaggggtacctctgtaatcctagtcctcctattattg 804
Query: 605 atggagacagacataggatccctggcaggcagcttatgggtcagaaaacctagtgtctcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atggagacagacataggatccctggcaggcagcttatgggtcagaaaacctagtgtctcc 864
Query: 665 agctgag 671
|||||||
Sbjct: 865 agctgag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_n10.g1 MSMg01no538_n10.g1 CHROMAT_FILE:
MSMg01no538_n10.g1 PHD_FILE: MSMg01no538_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:35 2005
(658 letters)
>mm_chr1_133239301_133240358
Length = 1058
Score = 1071 bits (554), Expect = 0.0
Identities = 579/590 (98%), Gaps = 7/590 (1%)
Strand = Plus / Minus
Query: 76 gtgtgtacaaaagttaatagtttttgtttgtt--tgtttgtttgttt-gt----tttggt 128
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct: 1058 gtgtgtacaaaagttaatagtttttgtttgtttgtgtttgtttgtttggtttggtttggt 999
Query: 129 ttttcaagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagacca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 ttttcaagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagacca 939
Query: 189 ggctggctttgaactcagaaatccacctgcctctgtctcccgaatgctgggattaaaggc 248
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 938 ggctggctttgaactcagaaatccacctgcttctgcctcccgaatgctgggattaaaggc 879
Query: 249 gtgtgccaccacgcctagctagttaatagtttttaaaaagctgttagctgatcttttgtt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gtgtgccaccacgcctagctagttaatagtttttaaaaagctgttagctgatcttttgtt 819
Query: 309 taataattaaattgttttgaacttgccaagtctgacttttgcctgtaccaaaatttattt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 taataattaaattgttttgaacttgccaagtctgacttttgcctgtaccaaaatttattt 759
Query: 369 ccttatcttatgatgaccaagaaaagaaaaactaacttttcagttgtaagataccacatg 428
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 758 ccttatcttatgatgaccaagaaaagaaaaactgacttttcagttgtaagataccacatg 699
Query: 429 gccattgacaatccacactgagcaaatgaaaggacgtcaattgtcttccagtcatgaagc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gccattgacaatccacactgagcaaatgaaaggacgtcaattgtcttccagtcatgaagc 639
Query: 489 acactcagcatggagcaaattagatttgtcttccagctgggacaatttgtttaatttttt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acactcagcatggagcaaattagatttgtcttccagctgggacaatttgtttaatttttt 579
Query: 549 tctttgcgcactctccttttttctttaagagccctaacatgattgattggtgtttttgta 608
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctttgtgcactctccttttttctttaagagccctaacatgattgattggtgtttttgta 519
Query: 609 aatctgtttcacttagttaaactccaaatccttggtgtttttgtagtttt 658
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aatctgtttcacttagttaaactccaaatccttggtgtttttgtagtttt 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
