BAC Information

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BAC

Clone NameMSMg01-539B18
Chromosome1 (Build37)
Map Location 38,152,618 - 38,199,209
singlet/doubletdoublet
Overlap geneRev1
Upstream gene4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b
Downstream geneEG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539B18.T7 (MSMg01no539_b18.b1)MSMg01-539B18.TJ (MSMg01no539_b18.g1)
ACCAG605679AG605680
length773761
length of high quality
(start - end)
562 (70 - 631)167 (76 - 242)
definitionCHROMAT_FILE: MSMg01no539_b18.b1 PHD_FILE: MSMg01no539_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:56 2005CHROMAT_FILE: MSMg01no539_b18.g1 PHD_FILE: MSMg01no539_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,152,618 - 38,153,179)(38,199,043 - 38,199,209)
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGAAGATCTGGTAAAGAGGCAGTAACTGTAATCATGGAATC
TAGCTGTCAGCAGGTAAGCCCTCTCCCCGGCTGCTTACTGTCAACTGTCC
CTCAGACTTTCCAAATCAAAGTGTCATAAATTCAGATTCACACTCCAGCC
ATGGTCACTGACAGAACTGTCCGTGATGACATTCTTCTTCTCTGGAGTGA
AGCTAACTTCGTACCCTGAGAGCTTCACGTGAGTCTTATAAGGAGACACG
GGGCTAAAAGCCACATATTCATCCATAACAGAACACAGCATGACAGAAGG
CTTTAGAGGGATGGTGTAGGGACAGGCCTTCACATTTAATCCTTCAAAGT
TTATAGATCTTTTATAGTCTGACAGATATGTCTGACTTTCTAGAAGTAAT
AAGACATTACTGAACTTTTAGAATTTATTGAGGTTTATAGAGTAAGTTAA
TTACAGTACTTCTTGTACAGTATGCCTCTATAACACACCCAATATGCTTA
GTCTGCACAAGTGATTTCTAGCTTTCATAAAACCACAACAGATACATTCA
CATCTGTCTTTCTTTATTTACTAATTCTGTTAGAGAGTACGAGAGAGACT
GTGTGTGTGTGCACGTGAGTACAGCTGGCAGCAGTCAGATTCTGACCTCT
ATTGTGAGGATCCACACTGAGCAAACTTGGGTTCTCAGAGTCGTCAATGA
CCACCTTTCTCTACTGAGCCAAC
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCATCATTAGGACATCTAATGTTG
GGGGATGCACTTAGGTTTAATTCACAAATGTCATCCTTATGCCTCTCATG
TTAGTTAACGGGGGATTTCTAAACCTTATCAATAACCCCAGGCCTTAGAG
AACTTTAGGCTTTTCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCC
GCCACATTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTAC
AGCACAAGCCATTGCTGTTCTGTTCAAGAATTTTTCCCCTGTGCCCATAT
CTTCAAGGGTTTTCCCCACTTTCTCCTCTATAAGTTTCAGAGTCTCTGGT
TTTATGTGAAGATCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGA
TAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGTTGTGAC
AGCATAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTG
TGGACACTATGCCCTTCCTTAGATTTGGGAACAAAACACCCATGGAAGGA
ATTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAG
ACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACAC
CATTGCATACACTAGCAAGATTTTATTGAAAGGACACACATGTAGCTGTC
TCTTGTGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_b18.b1 MSMg01no539_b18.b1 CHROMAT_FILE:
MSMg01no539_b18.b1 PHD_FILE: MSMg01no539_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:56 2005
         (562 letters)



>mm_chr1_38152418_38153379
          Length = 962

 Score = 1025 bits (530), Expect = 0.0
 Identities = 554/562 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaagaggcagtaactgtaatcatggaatctagctgtcagcaggtaagccctctccccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaagaggcagtaactgtaatcatggaatctagctgtcagcaggtaagccctctccccg 260

                                                                       
Query: 61  gctgcttactgtcaactgtccctcagactttccaaatcaaagtgtcataaattcagattc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcctactgtcaactgtccctcagactttccaaatcaaagtgtcataaattcagattc 320

                                                                       
Query: 121 acactccagccatggtcactgacagaactgtccgtgatgacattcttcttctctggagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactccagccatggtcactgacagaactgtccgtgatgacattcttcttctctggagtg 380

                                                                       
Query: 181 aagctaacttcgtaccctgagagcttcacgtgagtcttataaggagacacggggctaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aagctaacttcgtaccctgagagcttcacgtgagtcttataaggagacacagggctaaaa 440

                                                                       
Query: 241 gccacatattcatccataacagaacacagcatgacagaaggctttagagggatggtgtag 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gccacatattcatccataacagaacacagcatgagagaaggctttagagggatggtgtag 500

                                                                       
Query: 301 ggacaggccttcacatttaatccttcaaagtttatagatcttttatagtctgacagatat 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ggacaggccttcacatttaatccttcaaagtttacagatcttttatagtctgacagatat 560

                                                                       
Query: 361 gtctgactttctagaagtaataagacattactgaacttttagaatttattgaggtttata 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gtctgactttctagaagtaataagacattattgaacttttagaatttattgaggtttata 620

                                                                       
Query: 421 gagtaagttaattacagtacttcttgtacagtatgcctctataacacacccaatatgctt 480
           ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct: 621 gagtaagttaattacagtacttcttatacagtacgcctctataacacacccactatgctt 680

                                                                       
Query: 481 agtctgcacaagtgatttctagctttcataaaaccacaacagatacattcacatctgtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtctgcacaagtgatttctagctttcataaaaccacaacagatacattcacatctgtct 740

                                 
Query: 541 ttctttatttactaattctgtt 562
           ||||||||||||||||||||||
Sbjct: 741 ttctttatttactaattctgtt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no539_b18.g1 MSMg01no539_b18.g1 CHROMAT_FILE:
MSMg01no539_b18.g1 PHD_FILE: MSMg01no539_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:56 2005
         (167 letters)



>mm_chr1_38198868_38199434
          Length = 567

 Score =  261 bits (135), Expect = 1e-74
 Identities = 159/167 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatcattaggacatctaatgttgggggatgcacttaggtttaattcacaaatgtcatc 60
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 342 agcatcattaggacatctaatgttgggggatgcacttatgtttaatccacaaatgtcatc 283

                                                                       
Query: 61  cttatgcctctcatgttagttaacgggggatttctaaaccttatcaataaccccaggcct 120
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct: 282 cttatgcctctcatgttagttaatggggaatttctaaaccttatcaataaccccaggtct 223

                                                          
Query: 121 tagagaactttaggcttttctttcctcctcctcctcctcctcctcct 167
           ||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 222 tagagaattttagtcttttctttcctcttcctcctcctcctcctcct 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)