BAC Information

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BAC

Clone NameMSMg01-539I03
Chromosome1 (Build37)
Map Location 55,011,114 - 55,011,525
singlet/doubletsinglet
Overlap genenone
Upstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
Downstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539I03.T7 (MSMg01no539_i03.b1)MSMg01-539I03.TJ (MSMg01no539_i03.g1)
ACCAG605984AG605985
length747730
length of high quality
(start - end)
667 (54 - 720)412 (80 - 491)
definitionCHROMAT_FILE: MSMg01no539_i03.b1 PHD_FILE: MSMg01no539_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:29 2005CHROMAT_FILE: MSMg01no539_i03.g1 PHD_FILE: MSMg01no539_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAATTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTTGTACACCAGGCTGACCTTGAACTCAAAAATCT
GCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCCTGCGCCACCAATC
TGGCCCAAGCCAACTCTTATGAAGGAAATTACTTAGCTGGAGCTGGCTTA
GATTTTAGAAGTTCAGTCCATTATCGTTATGACAGAAGCATGGCATCACG
CAGGCAGACATGCTGCTGGAGGAGCCAAGATTTCTGACTCTTGACCTGAA
GGCAGCCAGGAGGAGACTATCTTCCACAGGCAGCTAGAAGGAGGGTCTCT
TCCTCATTGGGCAGAGCTAGAGTATAAGGAGCTCTCAAAGCCCACCTACA
CCATGACATACTTTCTCCAACAAGGTAACATCTATTCCAACAAGGCCACA
CGTCTTAATAGTGCCACTTCCCATGGGCCAAGCATATTCAAACCACCATA
TTCTACTACTTGGCCCACATAAGCTTGTTCAAATACATGAGTCTATACAT
AGCCATAGCATAATGCAAAATACATTTAGTCTAATTTCAAAACTCCCCAT
GGTCTGTCACTGCCCGGGGCCAGCCCCAGCCTCTTGGGGTTTGGAGCTGA
GGTGAAACACAGAGTTGCATGAAAGCCAAAAGACTAATGATCTCCAGCCT
TGGAACTCTCCCTAATTGTACTGGGGGCTAGAAGCTGGTGGCTTCTG
GTAGCCTATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGTAGACCAGGCTGGCC
TTGAACTCAGAGATCCACTTGCTTCTGCTTCCTGAGTGCTGGGATTAAAG
GCATGAGCCACCACCTCCTGGCACACCTGTACTTTAGGGGTATATGTATG
TGTTGAATGACGGTCTTCCAAGCCAAGGATCCACCATCATGGGGAGTTCA
ACTGAGCCATGTTACAAAAGGTTTACCCCAACTGGGTTTATTGACTATTT
GCACACCAGTGCAGAGGGTCACAATTATCTTCACCTGCTTGTCCTGTCTC
TCTTACCTCTGATTGTATTCAACTCTGTCTTAATTGTAGTGACCTGTTGG
AGATGCCAGAGTCCATAGACCAACAGAGAAGAGGGTAGAAGCTCCATGCA
TATGGGCCTTTAGGGCAGGACTGTCCACACTCCTGGAAAGCAACTCCTCA
TTGAGGCTCTGTAAGGAAACCCAACTCACTGATGATTTTCCAGAGCTAAC
TTTGTCAATATCATTTCTCAGTTTGTTGTCACCTAGAAAGGAAGGATAGA
CGTTGCTTAGTCTCCTCATGGGAAGGAACTTTATCAGTATGGTGACTTTG
GAGGTAATTAGGCCATGAGGATGGAGACTCTGAAATAATATTGGTACCTG
TGTTGGTTTGAATCGCCTTGACTCCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_i03.g1 MSMg01no539_i03.g1 CHROMAT_FILE:
MSMg01no539_i03.g1 PHD_FILE: MSMg01no539_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:29 2005
         (412 letters)



>mm_chr1_55010914_55011726
          Length = 813

 Score =  725 bits (375), Expect = 0.0
 Identities = 403/413 (97%), Gaps = 3/413 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtagaccaggctggccttgaactcagagatccacttgcttctgcttcctgagtgc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 attctgtagaccaggctggccttgaactcagagagccacttgcttctgcttcctgagtgc 260

                                                                       
Query: 61  tgggattaaaggcatgagccaccacctcctggcacacctgtactttaggggtatatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcatgagccaccacctcctggcacacctgtactttaggggtatatgtat 320

                                                                       
Query: 121 gtgttgaatgacggtcttccaagccaaggatccaccatcatggggagttcaactgagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttgaatgacggtcttccaagccaaggatccaccatcatggggagttcaactgagcca 380

                                                                       
Query: 181 tgttacaaaaggtttaccccaactgggtttattgactatttgcacaccagtgcagag--g 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 381 tgttacaaaaggtttaccccaactgggtttattgactatttgcacaccagtgcagagagg 440

                                                                       
Query: 239 gtcacaattatcttcacctgcttgtcctgtctctcttacctctgattgtattcaactctg 298
           |||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gtcacaag-accttcacctgcttgtcctgtctctcttacctccgattgtattcaactctg 499

                                                                       
Query: 299 tcttaattgtagtgacctgttggagatgccagagtccatagaccaacagagaagagggta 358
            |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccttaattgcagtgacctgtgggagatgccagagtccatagaccaacagagaagagggta 559

                                                                
Query: 359 gaagctccatgcatatgggcctttagggcaggactgtccacactcctggaaag 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaagctccatgcatatgggcctttagggcaggactgtccacactcctggaaag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space:   324012
Effective search space used:   324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)