Query= MSMg01no539_l01.b1 MSMg01no539_l01.b1 CHROMAT_FILE:
MSMg01no539_l01.b1 PHD_FILE: MSMg01no539_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
(632 letters)
>mm_chr1_75798723_75799753
Length = 1031
Score = 1137 bits (588), Expect = 0.0
Identities = 618/628 (98%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 5 gaattcctttttactgaaggaaagcagcagacctccgttctgaactcagagtaatctaca 64
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattccttcctattgaaggaaagcagcagacctccgttctgaactcagagtaatctaca 772
Query: 65 tatgattttgcatatgtttgcatatcagattaaaaagctcccccctccccttgattatat 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 771 tatgattttgcatatgtttgcatatcaga-taaaaagctcccccctccccttgattatat 713
Query: 125 gtgatattaattaattgactagtgcaacccctagcagtttcccctgctggggctcctcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtgatattaattaattgactagtgcaacccctagcagtttcccctgctggggctcctcag 653
Query: 185 ccctggtacccaccccaggtgcatacttctctctgcagggagaatcaaaggccattctgg 244
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 652 ccctggtacccaccccaggtgcatacttctccctgcagggagaatgaaaggccattctgg 593
Query: 245 cagagctcagttgacactgctgctgatcagcctctgctcgaaggctttggaggagaaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cagagctcagttgacactgctgctgatcagcctctgctcgaaggctttggaggagaaagc 533
Query: 305 ctgcccaaccttgtccagaagagtgacagtgagcacccgccctcatgatccccgcccgcc 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 532 ctgcccaaccttgtccagaagagtgacagtgagcgcccgccctcatgatccccgcccgcc 473
Query: 365 ctccctgcggctcagaggcaaagaagaagtgtcccgaagcccttggacttcaaatgataa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctccctgcggctcagaggcaaagaagaagtgtcccgaagcccttggacttcaaatgataa 413
Query: 425 cttaggaaacaaagaaggggggaggggtggagaaaagtagccttggatcacctacaggaa 484
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 cttaggaaacaaagaaggggggaggggtggagaaaagtagccttagatcacctacaggaa 353
Query: 485 ccaaagagctaaagatagaacaaagacatcacagccaaactgggctctgggaagcttaca 544
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 352 ccaaagagctaaagatagaacaaagacaccacagccaaactgggctctgggaagcttaca 293
Query: 545 actcttctgcctcctcttcgttcatcatcctgttgaaaactgctacagacccaaagccct 604
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 292 actcttctgcctcctcttcgttcatcatcctgttgaaaactgctatagacccaaagccct 233
Query: 605 cacatcatgtgaaataagcagtatccct 632
||||||||||||||||||||||||||||
Sbjct: 232 cacatcatgtgaaataagcagtatccct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space: 635062
Effective search space used: 635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_l01.g1 MSMg01no539_l01.g1 CHROMAT_FILE:
MSMg01no539_l01.g1 PHD_FILE: MSMg01no539_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
(283 letters)
>mm_chr1_75623508_75624190
Length = 683
Score = 464 bits (240), Expect = e-135
Identities = 268/284 (94%), Gaps = 13/284 (4%)
Strand = Plus / Plus
Query: 1 aaggactgggaaagggtatttaggagaggagggggtgtatgacatatttgcaggcaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggactgggaaagggtatttaggagaggagggggtgtatgacatatttgcaggcaataa 260
Query: 61 tgactaggcttgacaagggattagcgactggacaaaaataagagatttgcagcttgggta 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgactaggcttgacaagggattagcgactggacaaaaataagagattcgcagcttgggta 320
Query: 121 aagtgaagcggtgggtgagctagttaatgtcgaacaggcaggcgct-gctttagagtttt 179
|||||| ||||||||||||||||||||||||||| | ||||||| |||||
Sbjct: 321 aagtga-----------agctagttaatgtcgaacaggcaggcg-tggctttagtgtttt 368
Query: 180 ctcacaatctcccaccatttcccttgggcttgtggtgatagaaagactcatgctaagtgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctcacaatctcccaccatttcccttgggcttgtggtgatagaaagactcatgctaagtgt 428
Query: 240 gggtggcatcgttccatggggtggagtcctggattgactggaaa 283
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 gggtggcaccgttccatggggtggagtcctggattgactggaaa 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
