NNCCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGACGAAACCAAATGGCTGAGAAGCACCTGAAAAAAA
AATGTTCAGCATCCTTAAACATCACGGAAAGGCAAATCAAAAGAACACTG
AGATTCCATCTCACACCAGTTAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCAAAGATGTGAAGAAAGAGGAACACTCATCCATTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTAATACCAGAGGTTCCCGGAATACCTCTCCT
GGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAAGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGACGAATGGATACAAAAAATGTGGTACATTTACAC
AATGGAGTACTACTCGGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
GCAAATGGATGGACCTGGAAGGCATCATCCTGAGTGAGGTAACCCAATCA
CAAAAGAACTCACCTGAGATGTACTCACTGATAAGTGGATATTAGCCCAG
AAACTTAGAATACCCAAGATACAAGATACAATGTACATGAAACTCAAGAA
TAACTAAGAACAAAGTGTGGACACTTTGCCCCTTCATTAGAATGGGAACA
AACACCCATGGAAGGGAGTACAGAGACAGTTTGGAGCTGAAA

NTCAATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCCAAATGAAAACAATAATG
GTTAAACCAGGACATTGTGTAACAAAAAATAGTCTGTGCTCCAAAACATG
CATTCTTAAGATATTTGTACCAAACAACAGTGCCCTAATATATGCAACAA
AACTCAAAGTATCTAAATACAATAGATGAAGTTTCAAATACACTATGGAG
TTGGAGTCTTTAGCTCTTTCTCATCTTAACTGACAAATCCAAGAAGTAGC
AGAAATATTATTAAGGTTGTAATTAATTGGAACAACATCCTCTTCCAACT
GAACCAATTAACCATGCTTCATCTGTGAACTGCATAACATAACCCTAATT
CTGCGGCTCCAGATAGACCATATATGGGGAAAATGGTCTTTTTGTTTGTT
GTTTCTTTTGGTTTTTTGTTAAGATGTAATTTAAGTCCACTAGTTACAAT
GTGCATGATGCACATGAAATATATTTTTAAAAAGAAAAAATATGTAAATA
GTGAATTTAAGATTCAATGTTAGGAAACAAAAGAAAGAGTCTAGTTTTAA
CCTACAGTCACACACACACACACACACAAAGTCTACCTTGAATAGATTAA
ATGCTTAGATATATAATTTAAAATTATTAACAGATATGTTTTTATGGCTA
CAGAAATGGGTCAAATTTTTATAAACCTGAAACTGTGCAAAGCAAAAAAT
CTCTTAATTTAACATAAAN

Query= MSMg01no539_n15.g1 MSMg01no539_n15.g1 CHROMAT_FILE:
MSMg01no539_n15.g1 PHD_FILE: MSMg01no539_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:57 2005
         (628 letters)



>mm_chr1_101164523_101165550
          Length = 1028

 Score = 1129 bits (584), Expect = 0.0
 Identities = 618/636 (97%), Gaps = 12/636 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacccaaatgaaaacaataatggttaaaccaggacattgtgtaacaaaaaatagtctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agacccaaatgaaaacaataatggttaaaccaggacattgtgtaacaaaaaatagtctgt 252

                                                                       
Query: 61  gctccaaaacatgcattcttaagatatttgtaccaaacaacagtgccctaatatatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctccaaaacatgcattcttaagatatttgtaccaaacaacagtgccctaatatatgcaa 312

                                                                       
Query: 121 caaaactcaaagtatctaaatacaatagatgaagtttcaaatacactatggagttggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaaactcaaagtatctaaatacaatagatgaagtttcaaatacactatggagttggagt 372

                                                                       
Query: 181 ctttagctctttctcatcttaactgacaaatccaagaagtagcagaaatattattaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctttagctctttctcatcttaactgacaaatccaagaagtagcagaaatattattaaggt 432

                                                                       
Query: 241 tgtaattaattggaacaacatcctcttccaactgaaccaattaaccatgcttcatctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtaattaattggaacaacatcctcttccaactgaaccaattaaccatgcttcatctgtg 492

                                                                       
Query: 301 aactgcataacataaccctaattctgcggctccagatagaccatatatggggaaaatggt 360
           |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 493 aactgcattacataaccctaattctgtggctccagatagaccatatatggggaaaatgtt 552

                                                                       
Query: 361 ctttttgtttgtt--------gtttcttttggttttttgttaagatgtaatttaagtcca 412
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctttttgtttgtttgtttgttgtttcttttggttttttgttaagatgtaatttaagtcca 612

                                                                       
Query: 413 ctagttacaatgtgcatgatgcacatgaaatatatttttaaaaagaaaaaatatgtaaat 472
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttagttacaatgtgcatgatgcacatgaaatatatttttaaaaagaaaaaatatgtaaat 672

                                                                       
Query: 473 agtgaatttaagattcaatgttaggaaacaaaagaaagagtctagttttaacctacagtc 532
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtgaatttaagtttcaatgttaggaaacaaaagaaagagtctagttttaacctacagtc 732

                                                                       
Query: 533 acacacacacacacacacaaagtctaccttgaatagattaaatgcttagatatataattt 592
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 acacacacacacaca----aagtctaccttgaatagattaaatgcttagatatataattt 788

                                               
Query: 593 aaaattattaacagatatgtttttatggctacagaa 628
           ||||||| ||||||||||||||||||||||||||||
Sbjct: 789 aaaattactaacagatatgtttttatggctacagaa 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)