Query= MSMg01no539_o12.b1 MSMg01no539_o12.b1 CHROMAT_FILE:
MSMg01no539_o12.b1 PHD_FILE: MSMg01no539_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:01 2005
(644 letters)
>mm_chr1_76004369_76005412
Length = 1044
Score = 1185 bits (613), Expect = 0.0
Identities = 637/645 (98%), Gaps = 2/645 (0%)
Strand = Plus / Minus
Query: 1 gcagacaggatgggctgactccttcacagagaaaagtcaacgtgctgctgtacttctgca 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 844 gcagacaggatgggctgactccttcacagaggagagtcaacgtgctgctgtacttctgca 785
Query: 61 cttaagtcaaggtagcccaagtgtgaccttctgattccagaacatctcttagaaatgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cttaagtcaaggtagcccaagtgtgaccttctgattccagaacatctcttagaaatgggt 725
Query: 121 tccctgtgtcaacttagtccccaggttccagggaataactgctttaactgtctttccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tccctgtgtcaacttagtccccaggttccagggaataactgctttaactgtctttccttg 665
Query: 181 atgaattctgttctaactaattagaagatcagttatgtgaacaacatgcaagtataattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atgaattctgttctaactaattagaagatcagttatgtgaacaacatgcaagtataattt 605
Query: 241 ataagcagagaagtaaccacaacgcaggcagatttttaaaaatctctcatttcagcaggc 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 604 ataagcagagaagtaaccacaacgcaggcagattttttaaaatctctcatttcagcaggc 545
Query: 301 cttaggcacttcc-ctgccctcctgacacccaccttcagtgtgctgaaaataatgcatgc 359
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttaggcac-tccgctgccctcctgacacccaccttcagtgtgctgaaaataatgcatgc 486
Query: 360 ttataaagcaaaaattagaaactttgattctaatttgctactcggagcctagaaaattcg 419
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 485 ttataaagcaaaaattagaaactttgattctaatttgctactcagagcctagaaaattca 426
Query: 420 atggcttaaggccaagatcgcattctacgctcctaattgtatacaacactcatctttctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atggcttaaggccaagatcgcattctacgctcctaattgtatacaacactcatctttctt 366
Query: 480 gcaaatagtcagaagttacgctggctaaaaccatgtacataaaattgcaaaaagcatttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcaaatagtcagaagttacgctggctaaaaccatgtacataaaattgcaaaaagcatttg 306
Query: 540 gattaagattccaaagcatcaataaaggaatttgtgtcttactatattagggcctgctag 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 gattaagattccaaagcatcaataaaggaatttgtgtctcactatattagggcctgctag 246
Query: 600 aaccaaatgccgaacactgctaaacaactggaatgtattgctgaa 644
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaccaaatgccgaacactgctaaacaactggaatgtattgctgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_o12.g1 MSMg01no539_o12.g1 CHROMAT_FILE:
MSMg01no539_o12.g1 PHD_FILE: MSMg01no539_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:01 2005
(629 letters)
>mm_chr1_75838158_75839186
Length = 1029
Score = 1139 bits (589), Expect = 0.0
Identities = 619/629 (98%)
Strand = Plus / Plus
Query: 1 tttcggctactgatccagaaaattggaaacaactttggctccctgttcaatcagttgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcggctactgatccagaaaattggaaacaactttggctccctgttcaatcagttgtat 260
Query: 61 aatcagtgcacgttgagcttgcccccaaattgtggccaccaggctgcttgaaagccagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcagtgcacgttgagcttgcccccaaattgtggccaccaggctgcttgaaagccagtg 320
Query: 121 gggaatccattatatgcgggcttttggaggctctggagctgggggcggggggggggggaa 180
|||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct: 321 gggaatccgttatatgcgggcttttggaggctctgaagctgggggcgggggagggggtaa 380
Query: 181 gcaaacagggaagctgattattagagtcgaggtgctcagaggctggggtgttagggactt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 gcaaacagggaagctgattattagagtcgaggtgctcagaggctggagtgttagggactt 440
Query: 241 gtaaacggaaggggcagctcttgttctccagtgagacagtaggaaaccgactagaaacta 300
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ggaaatggaaggggcagctcttgttctccagtgagacagtaggaaaccgagtagaaacta 500
Query: 301 ttttaaatgagtatgtctagagatcctacccagagtggagagtggtccatcctggaatgg 360
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ttttaaatgagtatgtctagagctcctacccagagtggagagtggtccagcctggaatgg 560
Query: 361 ttgtgactcgtaggagagacacaaaggttactggtggggaggcgggtgtctagatgatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgactcgtaggagagacacaaaggttactggtggggaggcgggtgtctagatgatag 620
Query: 421 ataaacacctgaaagttgggtcaaaatgagaacctattatggagatgtggggtgagatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaacacctgaaagttgggtcaaaatgagaacctattatggagatgtggggtgagatca 680
Query: 481 aggagaagagagttcttggcgagagattgcctctgtaatttatcccagaccctttaattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggagaagagagttcttggcgagagattgcctctgtaatttatcccagaccctttaattc 740
Query: 541 ctgaccacaaccctgggaaggagatcatcacctccctagccagcacaattgactcgtatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgaccacaaccctgggaaggagatcatcacctccctagccagcacaattgactcgtatg 800
Query: 601 aaggttgttaacttgagaaaatcaccaga 629
|||||||||||||||||||||||||||||
Sbjct: 801 aaggttgttaacttgagaaaatcaccaga 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
