Query= MSMg01no539_p03.b1 MSMg01no539_p03.b1 CHROMAT_FILE:
MSMg01no539_p03.b1 PHD_FILE: MSMg01no539_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:04 2005
(437 letters)
>mm_chr1_183137013_183137851
Length = 839
Score = 696 bits (360), Expect = 0.0
Identities = 367/370 (99%), Gaps = 2/370 (0%)
Strand = Plus / Minus
Query: 70 agagagtgtcctcaattgaatgtctgggctttaaaacctgggtatggttttggttttttg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 agagagtgtcctcaattgaatgtctgggctttaaaacctgggtatggttttggttttttg 780
Query: 130 agatagggtttctctgtatagccctggctgtcctggaactcactttgtacaccaggctgg 189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 779 agatagggtttctctgtatagccctggctgtcctggaactcactttgtacaccaggctag 720
Query: 190 ccttgaattcagaaatccgcttgcctctgcctctgcctcctgagttctgggattaaaggt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ccttgaattcagaaatccgcttgcctctgcctctgcctcctgagttctgggattaaaggt 660
Query: 250 gtgcaccaccacgccctgctctgagtaagttttaattggaaagtttttcaca--tttttt 307
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 659 gtgcaccaccacgccctgctctgagtaagttttaattggaaagtttttcacatttttttt 600
Query: 308 ttggctcaaactgaatgagctaaatcacaataaagtggccaaaatctggattgggattta 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttggctcaaactgaatgagctaaatcacaataaagtggccaaaatctggattgggattta 540
Query: 368 ttggtggctataaagaaattatttgtgtaatattttgatgtgatttcttggagcatgttt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttggtggctataaagaaattatttgtgtaatattttgatgtgatttcttggagcatgttt 480
Query: 428 tcatttttta 437
||||||||||
Sbjct: 479 tcatttttta 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 839
Length adjustment: 9
Effective length of query: 428
Effective length of database: 830
Effective search space: 355240
Effective search space used: 355240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_p03.g1 MSMg01no539_p03.g1 CHROMAT_FILE:
MSMg01no539_p03.g1 PHD_FILE: MSMg01no539_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:04 2005
(328 letters)
>mm_chr1_183017090_183017818
Length = 729
Score = 542 bits (280), Expect = e-158
Identities = 317/330 (96%), Gaps = 3/330 (0%)
Strand = Plus / Plus
Query: 1 tttatttaagatagagagcaggctcttgtcacaaagaactcttgtcccaaaactcatgga 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tttatttaagatagagagaaggctcttgtcacaaagaactcttgtcccaaaattcatgga 260
Query: 61 ttcagcatttataaaggcaaaagccataaggacattagtcacagaaaatcctgaatgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagcatttataaaggcaaaagccataaggacattagtcacagaaaatcctgaatgtgc 320
Query: 121 tgccactcagtggtaaggggttggggctggctgaaagagcaccctgacaaaatagagtaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgccactcagtggtaaggggttggggctggctgaaagagcaccctgacaaaatagagtaa 380
Query: 181 gatcattggcaggacagcaaagcaacctgaaattagagtccaacatgccacttttccacg 240
||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||
Sbjct: 381 gatcattggcaggacagcaaagcaaactgaaatt-gagtccaacgtgccactttcccaca 439
Query: 241 tctgggaactacttctgggcactcccacataggtacatttctttcttttaaagattttat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 tctgggtactacttctgggcactcccacataggtacatttctttcttttaaagatttcat 499
Query: 301 ttatgtatatgagtag--tgttgctgtctt 328
| |||||||||||||| ||||||||||||
Sbjct: 500 tgatgtatatgagtagagtgttgctgtctt 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 729
Length adjustment: 9
Effective length of query: 319
Effective length of database: 720
Effective search space: 229680
Effective search space used: 229680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
