BAC Information

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BAC

Clone NameMSMg01-540B24
Chromosome1 (Build37)
Map Location 189,288,432 - 189,288,684
singlet/doubletsinglet
Overlap genenone
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540B24.T7 (MSMg01no540_b24.b1)MSMg01-540B24.TJ (MSMg01no540_b24.g1)
ACCAG606450AG606451
length925680
length of high quality
(start - end)
---254 (78 - 331)
definitionCHROMAT_FILE: MSMg01no540_b24.b1 PHD_FILE: MSMg01no540_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:18 2005CHROMAT_FILE: MSMg01no540_b24.g1 PHD_FILE: MSMg01no540_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTCTCTTCCCTGCGCCCCCCCCCACTCCCTCCCATACCACTTCCCC
ATTCCCCGCCCCCTCCCACCCTCCTNTTTGCCCCGGGGNGGNNNNNNCCC
CCCGGCCCCNCNCCCGGNNNACACTACTAATAAATATTTGCCGGGGCCCG
TCCCTAAATTACGNCACCTCCACCTTAAATAAGGGGGCTGTCACGGCATA
ACCCGCCGGGGNAAATTTCCCTTTCCCTGGTGGGATTCTCTCCCCGCGNT
CCCCCAAATAACCTTTAAATTCAACTGGGGGGTTTAGAAAAACACCTTTG
GGCTTCTCTTTTTAAAAAAAAATTTGGGCCCACAAAACCCCGGTGGGGCC
CCTTTTGGGTTTTTTTCTACGACTTTTTCCCCCACACACCCGGGGTGTGT
TACCCACCCCCCCTCCTCCAAAAAAATAAAGGGGGCGCCCCCCCCCCCGC
GGGGGAAAAGAAGAGCTGGCGGGGGAAATTTTTTTTTTGGGCCACATATT
GTGGGTGGCGGGGGGAAAATAAAAACAACACCCCTGTTGGGGGGAGGCGC
CCCCCCCCCCCCCCTCCTCAAAAAGAAAAAGAGAGAGAGAATATTTTTTT
TTTTTCTATCCTCCCCCCCGCGGGGCGTTTCTCTCTCTTCTTTTGTCTTT
TTGTGGGGGGGGGGTTTTTCCTCCTCCCCCGCCCGCCGGGCGGGGGGCGG
GGGGGGGAAGGGGAGTTTTCTTCTTTTCCACAAAAACACACCACCCCCCC
TCCCCCCCCCTCCCGGTGAGGTTGTCCCCCACCACAAAAAAAGGGAGGGG
GGGGGGGGGGGTTTGTAGAAAACACACCCACTCCCCTCCTCCCCCCCCCC
TTCTTGGGGGGGGCCGCCCCCCCACCCACAATAAAAAACATTTTTTTCCC
CCCCCCCCCCCCAACCCGCACTGCG
NCCACATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAACACTTGGCTTCCTATC
TGAATGCTTCTTGGAGGTGGGAAGACACTCTGGCACAATCCTGTTACTTC
ACTCATGTGGGCTCCTTGAAGCTGTAGACATGGAAATGACAGTGAGGAAA
TTTGAAAGATTGATTGATTAGAGGCAATAAGGTAGGCCAATTAGGGCAAA
GTGAAACTCAAGGACTGATCTGTTCTGTGTGGGTCTTCATTCTGTCCTTT
GTAAGCTGGGTAAATGTTANCCAACCCATCCCATGTCCTGGGGGGCCTTT
TGAAAAATTTTGCTAACCAGGTGAAGAGGGACAAGGGGGCCTTCCCCTGG
GGCAAGGGGGGGTTTTAAAAAAAACCCCCCCCCTTTTTTCCACCCCCCCC
CGCCGGCGGGGGAAAAAACCCCCCCCCCCCACAAATTTTTGCGGGGGAAA
ATTTTTCTTTTGTGGGGGGGGGGCGGCCCCCTCTTTTCTTTTAAAAAAAC
CCCCCCCCCCCCAAAAAAAAAAAAAACGGGAAGGGCCCNNCTTNCCCCCT
TTCCCCTTTTTTTTTTTTTTTTTTTTGGCCCGCCCCCCCCCTCNCCCCCT
CTCTCTCTTCTTTTATCCCCAGAGAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_b24.g1 MSMg01no540_b24.g1 CHROMAT_FILE:
MSMg01no540_b24.g1 PHD_FILE: MSMg01no540_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:18 2005
         (254 letters)



>mm_chr1_189288232_189288884
          Length = 653

 Score =  453 bits (234), Expect = e-132
 Identities = 249/254 (98%), Gaps = 1/254 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggaacacttggcttcctatctgaatgcttcttggaggtgggaagacactctggcaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 453 tcaggaacacttggcttcctatctgaatgcttcttggaagtgggaagacactctggcaca 394

                                                                       
Query: 61  atcctgttacttcactcatgtgggctccttgaagctgtagacatggaaatgacagtgagg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 393 atcctgttacttcactcatgtgggctccttgaagttgtagacatggaaatgacagtgagg 334

                                                                       
Query: 121 aaatttgaaagattgattgattagaggcaataaggtaggccaattagggcaaagtgaaac 180
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 333 aaatttgaaagattgattgattagaggcagtaaggtaggccaattcgggcaaagtgaaac 274

                                                                       
Query: 181 tcaaggactgatctgttctgtgtgggtcttcattctgtcctttgtaagctgggtaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcaaggactgatctgttctgtgtgggtcttcattctgtcctttgtaagctgggtaaatgt 214

                         
Query: 241 tanccaacccatcc 254
           || |||||||||||
Sbjct: 213 ta-ccaacccatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 653
Length adjustment: 9
Effective length of query: 245
Effective length of database: 644
Effective search space:   157780
Effective search space used:   157780
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)