Query= MSMg01no540_d08.b1 MSMg01no540_d08.b1 CHROMAT_FILE:
MSMg01no540_d08.b1 PHD_FILE: MSMg01no540_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:24 2005
(618 letters)
>mm_chr1_183945321_183946338
Length = 1018
Score = 719 bits (372), Expect = 0.0
Identities = 393/402 (97%), Gaps = 4/402 (0%)
Strand = Plus / Minus
Query: 6 gaattctgtcttgttccttgagcatattggtaaaaagtaatcctattctttcacagggtg 65
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaattctgtcttgttaattgagcatattggtaaaaagtaatcctattctttcacagggtg 342
Query: 66 gtagtgtcaagattcatatccaggaaagggtgcaaatggtagtttccactttcatggttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtagtgtcaagattcatatccaggaaagggtgcaaatggtagtttccactttcatggttt 282
Query: 126 gccatttatgcttgtagctgttgggtatgtgactctttcacagatatttattttacaagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gccatttatgcttgtagctgttgggtatgtgactctttcacagatatttattttacaagt 222
Query: 186 agctacatattcaggttttgtttgtttgtttgttgtgtttgttttttcaggacagttttt 245
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aactacatattcaggt----tttgtttgtttgttgtgtttgttttttcaggacagttttt 166
Query: 246 attaaatatgtaactctggctgtctcggaaactcactgtgtagaccaggctggcttcaaa 305
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 165 attaaatatgtaactctggctgtcttggaaactcactgtgtagaccaggctggcttcaaa 106
Query: 306 ctcagagatccacctgcctctgcctccttaatgctgggattaaaggcgtgcgtcaccact 365
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 105 ctcagagatccacctgcctctgcctccttaatgctgggattaaaggagtgcgtcaccact 46
Query: 366 gcccggccatcttcagggttctttttgtttgtttgctttttt 407
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 gcccggccatcttcagggttctttttgtttgtttgctttttt 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_d08.g1 MSMg01no540_d08.g1 CHROMAT_FILE:
MSMg01no540_d08.g1 PHD_FILE: MSMg01no540_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:24 2005
(627 letters)
>mm_chr1_183779935_183780961
Length = 1027
Score = 1189 bits (615), Expect = 0.0
Identities = 624/627 (99%)
Strand = Plus / Plus
Query: 1 tctatgtagactaggctggccttgaactcacagagatccaccggcctctgcttcccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatgtagactaggctggccttgaactcacagagatccaccggcctctgcttcccaaat 260
Query: 61 gctgggattaaagttgaatagtgtaattttttaaagatttatttatttaatttatgtata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattaaagttgaatagtgtaattttttaaagatttatttatttaatttatgtata 320
Query: 121 tgagtacactgtagctgtagagatggttgtgagccttcgtgtggttgttgggtattgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtacactgtagctgtagagatggttgtgagccttcgtgtggttgttgggtattgaat 380
Query: 181 ttaagacctctgatcactccattcagccttgctcgcttagtcccaagattgatttattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagacctctgatcactccattcagccttgctcgcttagtcccaagattgatttattat 440
Query: 241 tataaataactacaaccttgctgtcttcagacacaccagaagagggcgtcagacctcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataaataactacaaccttgctgtcttcagacacaccagaagagggcgtcagacctcatt 500
Query: 301 acaggtggttgtgatttgaactgggatttgaactcaggagctctggaagagcagtcagtg 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 acaggtggttgtgatttgaactgggatttgaattcaggagctctggaagagcagtcagtg 560
Query: 361 ctcttacctgctgagccatctcaccagcccaataattttctaaaagtaaacagataatga 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttacctgctgagccatctcaccagcccaataattttctaaaagtaaacagataatga 620
Query: 421 tagattcttcaaaaggatacccccagcgagctacttcctccaaccaggctctgcctgtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagattcttcaaaaggatacccccagcgagctacttcctccaaccaggctctgcctgtta 680
Query: 481 atagcccagaaagttctaggctcattaaggctgcgttctcctcacatatagaggaatggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagcccagaaagttctaggctcattaaggctgcgttctcctcacatatagaggaatggg 740
Query: 541 tcagtagcagtgctgatcttattccctcctaatagcactaccaactgggagccaaagctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagtagcagtgctgatcttattccctcctaatagcactaccaactgggagccaaagctg 800
Query: 601 taacacatgggattctcctggggaaag 627
||||||||||||||| |||||||||||
Sbjct: 801 taacacatgggattcccctggggaaag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
