Query= MSMg01no540_g12.b1 MSMg01no540_g12.b1 CHROMAT_FILE:
MSMg01no540_g12.b1 PHD_FILE: MSMg01no540_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:40 2005
(632 letters)
>mm_chr1_47158851_47159882
Length = 1032
Score = 1075 bits (556), Expect = 0.0
Identities = 606/630 (96%), Gaps = 12/630 (1%)
Strand = Plus / Plus
Query: 1 tggccttgaatatacattcttcttaaattagccacctgcatgctcaggttacaggcttga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggccttgaatatacagtcttcttaaattagccacctgcatgctcaggttacaggcttga 260
Query: 61 gaaaccatgcctggctctccgccttcctctttttcagccagctctgctttcttgtgcata 120
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gaaaccatgtctgactctcggccttcctctttttcagccagctctgctttcttgtacata 320
Query: 121 acaatcagtgtttttctcatggtattaaaaggcaaattaaaaaagatatataatagagaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatcagtgtttttctcatggtattaaaaggcaaattaaaaaagatatataatagagaa 380
Query: 181 catttaaattaaaccaaaatgccaagatataattggcaagatatgctccaaatataactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttaaattaaaccaaaatgccaagatataattggcaagatatgctccaaatataactt 440
Query: 241 attaattaaggttcacagcatgcacttttaagcacatggcacgtgttttccccctattgt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaattaaggttcacagcatgcacttttaagcacatggcacgtgttttccccctattgt 500
Query: 301 gaaaataatgtatttgacatgaatagaaaaatctagcaattatctgctaaatgccaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaataatgtatttgacatgaatagaaaaatctagcaattatctgctaaatgccaaaaa 560
Query: 361 tttacaatatttatattatatgctgtggtgaagaggctccatctgggtttactgatgtca 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttacaatatttatcttatatgctgtggtgaagaggctccatctgggtttactgatgtca 620
Query: 421 aaaccaaagccataatcagagaatttgaaaagcagtctttttttcaagcagaaaacagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccaaagccataatcagagaatttgaaaagcagtctttttttcaagcagaaaacagta 680
Query: 481 ggaaacgtttgctgattctgcttcttctgtgaaagggatgtattctctgtgctaaggagg 540
||| |||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 681 gga------------ttctgcttcttctgtgaaccgtatgtattttctgtgctaaggagg 728
Query: 541 tgcctgcctctgtcccgagcaaaggggttcctatggacatatttcctcatctcactcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgcctgcctctgtcccgagcaaaggggttcctatggacatatttcctcatctcactcata 788
Query: 601 ctgtgatgtgacctttggttaactgaaaaa 630
||||||||||||||||||||||||||||||
Sbjct: 789 ctgtgatgtgacctttggttaactgaaaaa 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_g12.g1 MSMg01no540_g12.g1 CHROMAT_FILE:
MSMg01no540_g12.g1 PHD_FILE: MSMg01no540_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:40 2005
(634 letters)
>mm_chr1_47356735_47357766
Length = 1032
Score = 1071 bits (554), Expect = 0.0
Identities = 616/642 (95%), Gaps = 10/642 (1%)
Strand = Plus / Minus
Query: 1 aatcttctttcaaggaaatagtatttgagtgagtaatcatgcctggaatctaagtatttc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1015 aatcttctttcaaggaaatagtatttgagtgagtaatcatgcctgtaatctaagtatttc 956
Query: 61 tgcgggttaagagattttaatacttagtatctgggtagaaattataaagtaacaatcaaa 120
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 955 tgggggttaagggattttaatacttagtatctgggtagaaagtataaagtaacaatcaaa 896
Query: 121 ggaagaatgatagtgacagagtggtgagtatttaatatttaaaagtctagcttat----- 175
|||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 895 ggaagaatgatagtgacaaaggggtgagtatttaatatttaaaagtctagcttattaatg 836
Query: 176 ---tctgaacttacaacaccaggctttgaactacctctcatttaattctcaataaatcta 232
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 835 atgtctgaacttacaacaccaggctttgaactacctctcatttacttctcaataaatcta 776
Query: 233 aataatattgagaacaatatttttctgttcggaaaatggtggcttaaaaaggttgagaga 292
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 775 aataatattgagaacaatatttttctgttcagaaaatggtggcttaaaaaagttgagaga 716
Query: 293 cattttcaacatcataaaattacttagggacagttaaaatgggacattgaagaaacattt 352
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cattttcaacatcataaaatcacttagggacagttaaaatgggacattgaagaaacattt 656
Query: 353 taaaaataaaaactagagcatgtgcatatatataaagattatctttgggaatatgagaca 412
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 655 taaaaataaaaactagagcatgtgcatgtatataaagattatctttgggaatatgagaca 596
Query: 413 atacagtcaaatatattagtgaatttcactaaatgtagctacaagccacctcgtcaccag 472
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 595 atgcagtcaaatatattagtgaatttcactaaatgtagctacaagccaccttgtcaccag 536
Query: 473 aaacaagaatagatcggaaattactttgttgttttctcctttaaaatgcttagcaacaac 532
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||
Sbjct: 535 aaacaagaatagattggaaattactct--tgttttctcctttaaaatgcttagcaataac 478
Query: 533 aagcctaataagttttttaataaggcaaagatagtttctcataccaaaatgatagaatct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagcctaataagttttttaataaggcaaagatagtttctcataccaaaatgatagaatct 418
Query: 593 atttcatccattttccaaatagtttggagacaggtctacaga 634
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atttcatccattttccaaatagtttggagacaggtctacaga 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1032
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1022
Effective search space: 637728
Effective search space used: 637728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
