NACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATTTAATTTCTAAAAAAGGGTCTCCTCTCTAGTCCATGACAT
AACCAAGCATAGCTAATTGGCTAGGTTTACAGGGCCAAGCCTGATTGCCT
TCCCATTGATCAAAATGGTTGATTATCACTATAAAGTGTGACTATTGTCT
CATTACTGCTTGTTCTGCATGCATTGAAAATTACTTTGTAATGACACTGA
TATTCACGTCCATGTTATCTATGAATTTAGAGAAGAAAGGAGTAAATTTG
TGAGTAAGCTGACCTTTAACCTTCCTCATGCTCTTCTTTCTGATGCACCG
CTTTTCCCATTAGCACAGTTCCTCCTCCATCAGAATCATCTGCTCTATTT
GCTACCTAAGATCTTCACCGACTTTTCTGAGCTGTTGTTTCAAAACCCTC
CCACATTTACTAAGGTGTGCTCTCCCTACTTCTGTTGTTACACTAAAATA
AAGTTCAGTTAGAGCTTTTCCTTTTGTTTTAATCCTCTTACATATATATA
AAGAATATTTATTTACTTATTTATTTAATTTTCCTTCTTTTTCTGAGAGG
ATATTTGCTATCATATCTTTTGATTTTTTAACTCTTCCTGTTATTATAAC
TGCTACTAGGGCACATCAGGAATCTTTTGATATTGTATTTTATAAGTTGT
TTGTCAAAATATTCCATTTTACCCTTTTTATTTCCTCATGAGATCTTCAT
TTTATTTG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGACACAATGAGACCAAAGTTAAGGA
TAATAGGTATAGAAGACAGTGAAGATTCCCAACATAAGGACCAATAAATA
TCTTCAACAAAAATATACAAGAAAACTTCCCTAACCTAAAGAAAGAGATG
CCCAAGAACATACAAGTGGAGTACAGAACTCTAAGTAGATTTGACCAAAA
AAGAATTTACTCCCATCTTATAATAATCAATGCACCAAATGCACAAAACA
AAGAAACAAAATTCAAATCACTAAGGGGAAAAGGACAAGTAACATATAAA
GGCAGACCTAACAACACTACACCAGTCTTCTTACCAGAGACTATGAAAGC
TAGAAGATCATGGGTAAATGTAATATAGACCCTGAGAGAAAACAAATGCC
AACACAGGATAATATGCCCAGCAAAATGTTCAATTACCATAGATGGAGAA
ACCCAGATAATTCATGACAAAACAACATTTACACAATATCTTTCCACACA
TCCATCACTACAAAGGAAAATATATGGAAAACTCCAACAATGGGAGGGAA
ACTACACCCAAGAAAAAACAAGAGAGTCATCTTCTTTCAAAAAATCCAAA
AGAAGATAGCCACACAAACATAATTCCTACTCTTAACAACCAAAAATAAC
AGAAAGCAACAATCACTACTTTTTAATATCTCTTAACATCAATGAGCTCA
ATTCCCCAACCAAAAGACATAGACTA

Query= MSMg01no540_h16.b1 MSMg01no540_h16.b1 CHROMAT_FILE:
MSMg01no540_h16.b1 PHD_FILE: MSMg01no540_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:45 2005
         (634 letters)



>mm_chr1_117545599_117546632
          Length = 1034

 Score = 1143 bits (591), Expect = 0.0
 Identities = 621/631 (98%), Gaps = 1/631 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatttaatttctaaaaaagggtctcctctctagtccatgacataaccaagcat 63
           ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 801 ggaattcaatttaatttct-aaaaagggtcttctctatagtccatgacataaccaagcat 743

                                                                       
Query: 64  agctaattggctaggtttacagggccaagcctgattgccttcccattgatcaaaatggtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 agctaattggctaggtttacagggccaagcctgattgccttcccattgatcaaaacggtt 683

                                                                       
Query: 124 gattatcactataaagtgtgactattgtctcattactgcttgttctgcatgcattgaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gattatcactataaagtgtgactattgtctcattactgcttgttctgcatgcattgaaaa 623

                                                                       
Query: 184 ttactttgtaatgacactgatattcacgtccatgttatctatgaatttagagaagaaagg 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 ttactttgtaatgacactgatattcacatccatgttatctatgaatttagagaagaaagg 563

                                                                       
Query: 244 agtaaatttgtgagtaagctgacctttaaccttcctcatgctcttctttctgatgcaccg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 562 agtaaatttgtgagtaagctgacctttaaccttcctcatgctcttctttctgatgcacca 503

                                                                       
Query: 304 cttttcccattagcacagttcctcctccatcagaatcatctgctctatttgctacctaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttttcccattagcacagttcctcctccatcagaatcatctgctctatttgctacctaag 443

                                                                       
Query: 364 atcttcaccgacttttctgagctgttgtttcaaaaccctcccacatttactaaggtgtgc 423
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgttcaccgacttttctgagctgttgtttcaaaaccctcccacatttactaaggtgtgc 383

                                                                       
Query: 424 tctccctacttctgttgttacactaaaataaagttcagttagagcttttccttttgtttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctccctacttctgttgttacactaaaataaagttcagttagagcttttccttttgtttt 323

                                                                       
Query: 484 aatcctcttacatatatataaagaatatttatttacttatttatttaattttccttcttt 543
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aatcctcttatatacatataaagaatatttatttacttatttatttaattttccttcttt 263

                                                                       
Query: 544 ttctgagaggatatttgctatcatatcttttgattttttaactcttcctgttattataac 603
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttctgacaggatatttgctatcatatcttttgattttttaactcttcctgttattataac 203

                                          
Query: 604 tgctactagggcacatcaggaatcttttgat 634
           |||||||||||||||||||||||||||||||
Sbjct: 202 tgctactagggcacatcaggaatcttttgat 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)