NCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTAGTTTAGCCTTCATTGCTTCCAAAGAGTATTTA
AAAATCTCTACCAGGTTGTTTTTTAAAACTTATCTTGGTTATTAAGTAGA
AGAACTCTGAAACTATTTTTAGGGTTTATCTTATTCCTAAAAAGTATAAT
ATTCATAGAAAAAGTGATCTGGGTTAACAGAATTTTAATGGATGTTGCTG
AGTATTCCTCTGAGATTTGGAAATATTTCTTCCATCCTGTCAGTTCTTTA
AAGCTCTTTAAACATCATCTTCAGACAGCCAGAGACCCCAGAACACATAA
GCCATGAGTCTGAGACATTTGTTCTCTTTTGAAAGTAATTCCTGCCCTCA
GATACTTCCAGTTTGGCAGAGACTAGGGAGATGCATAATGCCTGGGAGAA
AACAGATTTAGCAAGTAATATGCCCCACATCTTTACCCCCGCTCTCCCGC
CACCATCACCACCAATCCTTAGTATTCAACAGGTTGGCCTTGCCTAAGTG
TAGGAAAAGCCAGGACATCTTGTTGGACAGCCACACCCCAAGTATTCTGA
TCACTGTTTTTAATGTTAAACCTATGTGCGTTTTAGAATGTATACCTGGG
CATAGACCTAAAAGCCATTTTTTTTTTCAGTTAAATATTTGAAACCATGA
CTAGAATTTTTTTTACTGCTGTCGCAGTGCCTTACTTTGATGCTTTCAGA
CAAGAAAGATGAA

NGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTATGTTTGATGCCAAAT
TCTTTACAAAATGAAGTAAAATTTTTGCTAGAACATGATGGCCCATTATC
TGTCTTAATAATTTTAGGCAATCCCATGGCATTAAAGGCTTGTAAGCAAT
GTTCGATTACATTTTTTGGAGGCTTCTCCAGTATGCAGAGAAGCAAAAAG
AAATCCTGAACAAGTATCAATACAAGCATGTATATATTTTAATTTTCCAA
ATTCTACATAATGAGTTACATCCATTTGCCAAATATGATTAGGCATAAGA
CCTTGTGGATTAACTCCTAAATGTGGCACTGGAGATAATGTAATACATTT
AGGACATTGTTTTACAATCATTCTTGCCTGCTCCTTAGTGATCTTATGTC
AGAGCCTTAAGATATGGCTAGAGAGGTGAAAATTTTCATGATCAGGTTTG
GCCAAAGCAACAGGATCTGAAATTAAGGCTTCTTCTATTAGAGCTTTGTT
GATGCAATCATTGCCTTCAGCTAAAGGTCCAGGAAGACCAGAATGAGATT
GTATGTAGCCAATATAGAATGGGTGTTTTTTGGCAAGAATAATATTTTGC
AATTATGAAAACAGGGATCCTGCTGGTGTATTAAAGTTAAACGTATCACA
GGTCTCCAATAAGGGTACCAATTGTACAACATATAAACTATCAGTAAAAA
TATTAAAAGCCTCN

Query= MSMg01no541_f15.b1 MSMg01no541_f15.b1 CHROMAT_FILE:
MSMg01no541_f15.b1 PHD_FILE: MSMg01no541_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:58 2005
         (657 letters)



>mm_chr1_17082343_17083398
          Length = 1056

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%), Gaps = 1/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagtttagccttcattgcttccaaagagtatttaaaaatctctaccaggttgtttttt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 856 cttagtttagccttcattgcttccaaagagcatttaaaaatctctaccaggttgtttttt 797

                                                                       
Query: 61  aaaacttatcttggttattaagtagaagaactctgaaactatttttagggtttatcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aaaacttatcttggttattaagtagaagaactctgaaactatttttagggtttatcttat 737

                                                                       
Query: 121 tcctaaaaagtataatattcatagaaaaagtgatctgggttaacagaattttaatggatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 736 tcctaaaaagtataatattcatagaaaaagtgatctgggttaacagaattttaatggacg 677

                                                                       
Query: 181 ttgctgagtattcctctgagatttggaaatatttcttccatcctgtcagttctttaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttgctgagtattcctctgagatttggaaatatttcttccatcctgtcagttctttaaagc 617

                                                                       
Query: 241 tctttaaacatcatcttcagacagccagagaccccagaacacataagccatgagtctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tctttaaacatcatcttcagacagccagagaccccagaacacataagccatgagtctgag 557

                                                                       
Query: 301 acatttgttctcttttgaaagtaattcctgccctcagatacttccagtttggcagagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acatttgttctcttttgaaagtaattcctgccctcagatacttccagtttggcagagact 497

                                                                       
Query: 361 agggagatgcataatgcctgggagaaaacagatttagcaagtaatatgccccacatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agggagatgcataatgcctgggagaaaacagatttagcaagtaatatgccccacatcttt 437

                                                                       
Query: 421 acccccgctctcccgccaccatcaccaccaatccttagtattcaacaggttggccttgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 436 acccccgctctcccgccaccatcaccaccaatccttagtattcaacaggttagccttgcc 377

                                                                       
Query: 481 taagtgtaggaaaagccaggacatcttgttggacagccacaccccaagtattctgatcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 taagtgtaggaaaagccaggacatcttgttggacagccacaccccaagtattctgatcac 317

                                                                       
Query: 541 tgtttttaatgttaaacctatgtgcgttttagaatgtatacctgggcatagacctaaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtttttaatgttaaacctatgtgcgttttagaatgtatacctgggcatagacctaaaag 257

                                                                    
Query: 601 ccattttttttttcagttaaatatttgaaaccatgactagaattttttttactgctg 657
           ||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 256 cca-tttttttttcagctaaatatttgaaaccatgactagaattttttttcctgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space:   676762
Effective search space used:   676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)