Query= MSMg01no541_m13.b1 MSMg01no541_m13.b1 CHROMAT_FILE:
MSMg01no541_m13.b1 PHD_FILE: MSMg01no541_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:34 2005
(684 letters)
>mm_chr1_103692819_103693901
Length = 1083
Score = 1129 bits (584), Expect = 0.0
Identities = 668/714 (93%), Gaps = 36/714 (5%)
Strand = Plus / Plus
Query: 5 gaattctttttgtatcttcagcaaactcaataccacagtaatgtttccattattttctct 64
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattc-ttttgtaccttcagcaaactcaataccacagtaatgtttccattattttctct 263
Query: 65 cagaatatccaatttattataaccagtttcttgatgatattaaatggtaaacctacaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 cagaatatccaatttattataaccagtttcttgatgatattaaatggtaaacctacactt 323
Query: 125 aaatagtacccattaatgaaaggtataggaggatgtatttcttgagtgttt--------- 175
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 aaatagtacccattaatgaaaagtataggaggatgtatttcttgagtgtttgtttgtttg 383
Query: 176 ---gtttgtttgtttgtttgtttgagacaaaggttctctgtatgaaaccagctgtcctga 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcgtttgtttgtttgtttgtttgagacaaaggttctctgtatgaaaccagctgtcctga 443
Query: 233 aactcactgtattggtcta-tttgggcccagaatcagagatccaatttctactgtctcct 291
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 aactcactgtattggtc-agtttgggcccaaaatcagagatccaatttctactgtctcct 502
Query: 292 gagtgctgggactaaaggcatgcattaccaccactgccaagttgaaatgtttccttttat 351
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 503 gagtgctgggactaaaggcatgcattaccaccactaccaagttgaaatgtctccttttat 562
Query: 352 gatttatttttatttatgtcagtatgtgtgactgtatgaatgatcacatcatgaatgcag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatttatttttatttatgtcagtatgtgtgactgtatgaatgatcacatcatgaatgcag 622
Query: 412 ctgttcttgggggccagaagacaatatgttatcccctggagcaagagttacaggtggctt 471
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 623 ctgttcttgggggccagaagacaatatgttattccctggagcaagagttacaggtggctt 682
Query: 472 gaacatgtaagtgctggaactgaattttggtcctctatagggaaagcatgtgttcccaac 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaacatgtaagtgctggaactgaattttggtcctctatagggaaagcatgtgttcccaac 742
Query: 532 tgcttagttacctatctcacttccaatactgaggtgttcgtactcagtaaaaatggagaa 591
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 743 tgcttagttacctatcccacttccaatactgaggtgttagtactcagtaaaaatggagaa 802
Query: 592 agtgatgaaaagcaat---g-gtgtgtgtgtgtg--tgtgtgtgtgtgttttgttttgtt 645
|||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct: 803 agtgatgaaaagcaattttgtgtgtgtgtgtgtgcgtgtgtgtgtgtgttttgttttgtt 862
Query: 646 ttg----gttt-----------ctgtagaatcatctatcactggttccctgcag 684
||| |||| |||||| |||||||||||||||||||||||||
Sbjct: 863 ttgttttgttttgttttgttttctgtagcatcatctatcactggttccctgcag 916
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_m13.g1 MSMg01no541_m13.g1 CHROMAT_FILE:
MSMg01no541_m13.g1 PHD_FILE: MSMg01no541_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:34 2005
(671 letters)
>mm_chr1_103866497_103867577
Length = 1081
Score = 975 bits (504), Expect = 0.0
Identities = 560/586 (95%), Gaps = 16/586 (2%)
Strand = Plus / Minus
Query: 102 atctcagaagctacaaaatgcagagttatatgatatat-attttttatttc-----tatt 155
|||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||
Sbjct: 1081 atctcagaagctacaaaatgcagagttatatgatatataattttttctttcttttttttt 1022
Query: 156 tttttcaagacagggtttctctgtgtatccctggctgtcctggaactcactctgtagacc 215
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1021 tttttcaagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagacc 962
Query: 216 aggctggccttgaactcagaaatctgcctgcctctgcctcccaagtgctgggattaaagg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aggctggccttgaactcagaaatctgcctgcctctgcctcccaagtgctgggattaaagg 902
Query: 276 catgcaccaccactgcccactttatgatatggttttatcactcaacttttttagccctaa 335
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 901 catgcaccaccactgcccggtttatgatatggttttatcactcaacgtttttagccctaa 842
Query: 336 gaattgaacaaagctttaaga--tttttttctcatttttgaattttcacccaacagctat 393
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattgaacaaagctttaagatttttttttctcatttttgaattttcacccaacagctat 782
Query: 394 gaattattttactaaatcagaaaagcctctatctgttccttaatacaatgtgtgtgtg-- 451
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 781 gaattattttactaaatcagaaaagcctctatctgtcccttaatacaatgtgtgtgtgtg 722
Query: 452 ----tgtgtgaatcattcaaaattttcagaatttacttttgtccttgaatgaagcatcag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgtttgtgtgaatcattcaaaattttcagaatttacttttgtccttgaatgaagcatcag 662
Query: 508 tcatcttctgtaattggtaccttgtatttgttattttactcttcctcaagatttgtctat 567
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 661 tcatcttctgtaattggtaccttgtatttgttattttacacttcctcaagatttttctat 602
Query: 568 caataatatgaatgctattttctaagaagagagatacacaatgccaccgtctcaccaacc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caataatatgaatgctattttctaagaagagagatacacaatgccaccgtctcaccaacc 542
Query: 628 tctgtgcac--agagtatggaaatgtctggtctcttcatgacgtta 671
||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 541 tctgtgcacaaagagtatggaaatgtctggtctcttcatgatgtta 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1081
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1071
Effective search space: 707931
Effective search space used: 707931
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
