Query= MSMg01no541_n22.b1 MSMg01no541_n22.b1 CHROMAT_FILE:
MSMg01no541_n22.b1 PHD_FILE: MSMg01no541_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:42 2005
(556 letters)
>mm_chr1_168856071_168857026
Length = 956
Score = 803 bits (415), Expect = 0.0
Identities = 451/485 (92%), Gaps = 34/485 (7%)
Strand = Plus / Minus
Query: 72 atcaacagccccagtacactatggaaaattttgatctcttctgataggcatttctctctc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 atcaacagccccagtacactatggaaaattttgatctcttctgataggcatttctctctc 897
Query: 132 tggcagagagatgaaagatatttgaaatctcccagggcttaaacctgccttactatggct 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tggcagagagatgaaagatatttgaaatctcccagggcttaaacctgccttactatggct 837
Query: 192 acagctttttctttacaatgcaggggagagagagagagagagagagagagagagagagag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 acagctttttctttacaatgcaggggagagagagagagagagagagagagagagagagag 777
Query: 252 agagagagagagagagagagagagagagagagagagagagagagagagagagatatgaaa 311
|||||||||||||||||||| ||||||
Sbjct: 776 agagagagagagagagagag----------------------------------atgaaa 751
Query: 312 gattttcaagattctggaagaggctctcttgctccctcagattctcagttgtccctgcct 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gattttcaagattctggaagaggctctcttgctccctcagattctcagttgtccctgcct 691
Query: 372 tgcgacctcaggacgacttctgtagagacagcagctcttgtgatgtcccactttgtgacc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgcgacctcaggacgacttctgtagagacagcagctcttgtgatgtcccactttgtgacc 631
Query: 432 ccactcagcagagctccaactctggttcctctgcacacccaggcctttgcacgtcaatgt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ccactcagcagagctccaactctggttcctctgcacacccaggcctttgcacgtcaatgt 571
Query: 492 gaccattctgccacacttagatccccactggagtgggctgtgctcagccctccagggcca 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaccattctgccacacttagatccccactggagtgggctgtgctcagccctccagggcca 511
Query: 552 gcagg 556
|||||
Sbjct: 510 gcagg 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 143
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_n22.g1 MSMg01no541_n22.g1 CHROMAT_FILE:
MSMg01no541_n22.g1 PHD_FILE: MSMg01no541_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:42 2005
(668 letters)
>mm_chr1_168798459_168799529
Length = 1071
Score = 1168 bits (604), Expect = 0.0
Identities = 654/674 (97%), Gaps = 9/674 (1%)
Strand = Plus / Plus
Query: 1 cagattcagagaaatactctgtctcagaaaaataaggtaaagatcaataaaggaagacat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 203 cagattcagagaaatactctgtctcagaaaaataaggtaaagaacaataaaggaagacat 262
Query: 61 taaacatcaacctcagccttcacatgtatgtgtgtgtgcacatatatgtgctctctctct 120
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 taaacatcaacctcagcctttacatgtatgtatgtgtgcacatatatgtgctctctctct 322
Query: 121 cacacacacacacacatgcacacacactaacttcagacacacacatatatatatacacac 180
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 323 --ctcacacacacacatgcacacacactaacttcagacacacacacatatatagacacac 380
Query: 181 ataaaatagttgtcagcacaaagttgaataaggacatgaagaaactgaatcacctgtgca 240
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaatagttgtcagcacaaagttgtgtaaggacatgaagaaactgaatcacctgtgca 440
Query: 241 ctgctagtgagaatgcaaaacagcaagagtattctggaaaacaatttgatgagttcctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctagtgagaatgcaaaacagcaagagtattctggaaaacaatttgatgagttcctat 500
Query: 301 agaattaaaaacacacctgtcattcaacccagaagttgttccattccttcctcccacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaattaaaaacacacctgtcattcaacccagaagttgttccattccttcctcccacatg 560
Query: 361 aatgcacatatctcttaaagaacctatagtccatatttggaaacgattagatctttagta 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aatgcacatatctcttaaagaacctatagtccatatttg-aaacgattagatctttagta 619
Query: 421 a----accaggacctacccttactacaaaaccctaatcaaactattggtgcatgccacaa 476
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtaaaccaggacctacccttactacaaaaccctaatcaaactattggtgcatgccacaa 679
Query: 477 cttggatgaatcccaagaaaattatactgattttt--aaaaatttattaggtattttctt 534
|||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct: 680 cttggatgaatcccaagaaaattacactgattttttaaaaaatttattaagtattttctt 739
Query: 535 catttacatttccaatgctatccccaaagtcccccataccctcccccacccactcccact 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 catttacatttccaatgctatccccaaagtcccccataccctcccccacccactcccact 799
Query: 595 tcttggccctggtgttcccttgtactgaggcatataaagtttgcaagaccaatgggcctc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcttggccctggtgttcccttgtactgaggcatataaagtttgcaagaccaatgggcctc 859
Query: 655 tctttccaatgatg 668
||||||||||||||
Sbjct: 860 tctttccaatgatg 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1071
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1061
Effective search space: 698138
Effective search space used: 698138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
