BAC Information

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BAC

Clone NameMSMg01-542F11
Chromosome1 (Build37)
Map Location 15,988,625 - 15,988,805
singlet/doubletsinglet
Overlap genenone
Upstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
Downstream geneLOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542F11.T7 (MSMg01no542_f11.b1)MSMg01-542F11.TJ (MSMg01no542_f11.g1)
ACCAG608139AG608140
length734833
length of high quality
(start - end)
179 (55 - 233)182 (71 - 252)
definitionCHROMAT_FILE: MSMg01no542_f11.b1 PHD_FILE: MSMg01no542_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:20 2005CHROMAT_FILE: MSMg01no542_f11.g1 PHD_FILE: MSMg01no542_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGTTTTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTGTTTATCTCTGTACCCCATTTTTTTAAATGGGG
TATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATACATTGGAT
ATTAGTCTCCTATCGGATTTAGGATTGGTAGAGATCCTTTCCCAATCTGT
TGGTGGCCTTTTTGTCTTATTGACAGTATCTTTTGCCTTACAGAAGCTTT
GNCATTTCATGANGGCCCCATTTGGTCAATCCTTGGATCTTACGGCACAA
GCCATTGCTGGTCTTGTTAGGGATATTTCCCCTTGGGGCCCTTTTTTTCC
AAAAGGGTTTTCCCTTAAATTTTCCCCCCCAGAAAATTTTCCCGGGCCCC
CGGGTTTTTTAAGGGGGGGGGGTTTTTTGACCCCCCCTTAAAAAATTTTA
CCCTTTTTTCACCCCGGGGGAGAATAAAAAAAAGGGGGGGTTAAATTTTT
TCGCATTTTTTTTTTTTTCTAATAGGGGGGGAAAAAACCCCCCCCCCTTT
TTTTTGTGCCCCCCCACCATTTTTTTTTTTTTAAAAAAAGAGGGGGGGGT
TTTTTTTTTTCTCTCGCGGGGGAAGATATTTTTTACCCCCCCCCCTCTTG
TGAGAAAAAAAAAAAAAGTTGCCCGCCCCCCCCGGTGGGGGGGTGGGGGG
GAGAAATGATTTTTTCATTTTGCTGGGGGTGGGN
NCCTTGGGGNNNCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGAAGAAACATGCTAGTACCTGAATTTG
ACTGAGTGCTCTTAAGTGTGGCTGTGTGCCTTGAACTAGCCCCCTTCCCT
GGACTCAGCACTCTGGAGATAGTCTGCCTCTCATTGTCTGTCCTATTCAA
GACTCCAGACCAGCTCTGAGGCTATGCCTTGTANAGAATGTGTCATCCCT
AAACAGACTACTTTAACATANTGGAATTTTTGACCTGATTAAAAGGCCAA
AACCCCACCCCGGGGGNAAACTTTCGGCTTTGGCATGAATTTCGTGGNNN
NNNNNTNNCNTNNNNNNGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGAGG
TGGGGTGGAGGGGAGGGAGGGGGGGGAGGGGGGGAGGGGGGGGGGGGGGG
GAGGGGGGGGGGGGGGGGAGGGGAGAAAAAAAAAAAANNNAAAANNNNNN
NTCTNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTNNGGTGGGTGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_f11.g1 MSMg01no542_f11.g1 CHROMAT_FILE:
MSMg01no542_f11.g1 PHD_FILE: MSMg01no542_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:21 2005
         (182 letters)



>mm_chr1_15988425_15989005
          Length = 581

 Score =  317 bits (164), Expect = 2e-91
 Identities = 178/183 (97%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaag-aaacatgctagtacctgaatttgactgagtgctcttaagtgtggctgtgtgc 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaagaaaacatgctagtacctgaatttgactgagtgctcttaagtgtggctgtgtgc 322

                                                                       
Query: 60  cttgaactagcccccttccctggactcagcactctggagatagtctgcctctcattgtct 119
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 c-tg-actagcccccttccctggactcagcactctggagatagtctgcctctcattgtct 264

                                                                       
Query: 120 gtcctattcaagactccagaccagctctgaggctatgccttgtanagaatgtgtcatccc 179
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 263 gtcctattcaagactccagaccagctctgaggctgtgccttgtagagaatgtgtcatccc 204

              
Query: 180 taa 182
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space:    99702
Effective search space used:    99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)