BAC Information

Click to search

BAC

Clone NameMSMg01-542J14
Chromosome1 (Build37)
Map Location 182,407,529 - 182,408,149
singlet/doubletsinglet
Overlap gene6330403A02Rik
Upstream geneSmyd3, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb
Downstream geneGm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J14.T7 (MSMg01no542_j14.b1)MSMg01-542J14.TJ (MSMg01no542_j14.g1)
ACCAG608334AG608335
length769756
length of high quality
(start - end)		638 (47 - 684)524 (75 - 598)
definitionCHROMAT_FILE: MSMg01no542_j14.b1 PHD_FILE: MSMg01no542_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:41 2005CHROMAT_FILE: MSMg01no542_j14.g1 PHD_FILE: MSMg01no542_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCTGTGTCGGCCTCCTGAGTGAAGAAGGGATTGCAGGTATAAA
CCACAACACCGAGCCAACTAATTACCTTCGTTTCTCTTGTTTGCAGTATT
TTCCCCCATTAGAATCTTAATTTTTTTTTGTGCTTTCCCAGTAATAGTCT
CTACCGTGTGGAATGTTGTGGTTTTCATGTCACCCTCAGAGACCTCTTTA
ATGGGGCTCTCTACCCGTCCTATTCTAATGAATACTGGCTGTCTTCCAGA
CTGCTGAGTAATTTCATCTCTTGGTTGCTTTGCTGGCTGGCCTAAGTAGT
GCTACCAACCAGATGGGTGGGGTCCCTTTGTCCTACCCCAGGTAGAAACT
GTAAGTAAGCAAGGAGAAGTTCTTCAACTGTGTCACAGGCAGTTTTTATT
GCCACCCCCCACCCCCGCCACACACACACACACACACACACACACACACA
CACACACACACACACACACTCAGAGTTTGGCAGCAGGCAGCCACAGATAG
CATCTTCCCATTAGAATTTTCATCCAGGGCTCCAGTACCAGGATCCTTAG
CCCTACAAGTGTTGCAGCCTCTGTATAGATCTGGAGATTTAGAAGTCAGC
CCTTGACAGTCATACAGTTTTGTTGTTGTTTTAGACCCAGGAAGTTGGGG
TTATTTAGCCTTTTAAACAAGCCAGTGTCAGAGCTCTTGACTTGGAAGTC
CCCAAGACTTTTGTCCCTA

ACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATCTCTTAGACCTATAGTAAGAATT
AAATGAGAATTAAATTGAGATTAATGAGAAACCCCAGGCTCACACCCCCA
GTCATAAACACCAGCTCACACCACAGCTCACACCCCAGACATAAATACCA
GCTCACACCACAACTTACACCACAACTCACATCCCAGTCGTAAACTCCAG
CTCACACCACAACTTACACCACAACTCACATCCCAGTCGTAAACTCCAGC
TCACACCACAACTTACACCACAGCTCACACCCCAGACATAAACAACAGCT
CACACCACAACTCACACTCCAGTCATAAACTCCAGCTCCCACGCCGGGCG
TGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGA
TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCC
AGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAAAACAAAA
CAAACAAACAAACAAAAACAACTCCAGCTCCCTCCTGCTCTTTCCTATGT
CCTGCTTGTGCCCTAACTAAGTGCTTTTTTCTATGACACTCCTTCTAAAA
CCATTATTCTTAGTAAAATTTACTGGTGCACCTTGGTTACTTATGGAACC
TTTTATTTTCCCATCTTTGTAATGAAGCCAAGACAGGGAAGAGTAACACT
TCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j14.b1 MSMg01no542_j14.b1 CHROMAT_FILE:
MSMg01no542_j14.b1 PHD_FILE: MSMg01no542_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:41 2005
         (638 letters)



>mm_chr1_182407326_182408361
          Length = 1036

 Score = 1033 bits (534), Expect = 0.0
 Identities = 605/636 (95%), Gaps = 16/636 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctgtgtcggcctcctgagtgaagaagggattgcaggtataaaccacaacac 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 204 ggaattctcctgtgccagcctcctgagtgaagaagggattgcaggtataaaccacgatac 263

                                                                       
Query: 64  cgagccaactaattaccttcgtttctcttgtttgcagtattttcccccattagaatctta 123
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 tgagccaactaattaccttcgtttctcttgtttgcagtatttttccccattagaatctta 323

                                                                       
Query: 124 atttttttttgtgctttcccagtaatagtctctaccgtgtggaatgttgtggttttcatg 183
           | ||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 324 aattttttt-gtgctttctcagtaatagtctctaccgtgtgaaatgttgtggttt-catg 381

                                                                       
Query: 184 tcaccctcagagacctctttaatggggctctctacccgtcctattctaatgaatactggc 243
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 382 tcaccctcagagacctctttaatggggctctctacccttcctattctaatgaatactggc 441

                                                                       
Query: 244 tgtcttccagactgctgagtaatttcatctcttggttgctttgctggctggcctaagtag 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtcttccagactgctgaataatttcatctcttggttgctttgctggctggcctaagtag 501

                                                                       
Query: 304 tgctaccaaccagatgggtggggtccctttgtcctaccccaggtagaaactgtaagtaag 363
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 502 tgctaccaaccagatgggtgaggtccttttgtcctaccccaggtagaaactgtaagtaag 561

                                                                       
Query: 364 caaggagaagttcttcaactgtgtcacaggcagtttttattgccaccccccacccccgcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 562 caaggagaagttcttcaactgtgtcacaggcagtttttattgccaccccccacccccg-- 619

                                                                       
Query: 424 acacacacacacacacacacacacacacacacacacaca-cacacacacactcagagttt 482
           |||||||||||||||||||||||||||           | ||||||||||||||||||||
Sbjct: 620 acacacacacacacacacacacacaca-----------atcacacacacactcagagttt 668

                                                                       
Query: 483 ggcagcaggcagccacagatagcatcttcccattagaattttcatccagggctccagtac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggcagcaggcagccacagatagcatcttcccattagaattttcatccagggctccagtac 728

                                                                       
Query: 543 caggatccttagccctacaagtgttgcagcctctgtatagatctggagatttagaagtca 602
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 729 caggatccttagccctacaagtgttgcagcctctgtatagatctggggatttagaagtca 788

                                               
Query: 603 gcccttgacagtcatacagttttgttgttgttttag 638
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 789 gcccttgacagtcatacagctttgttgttgttttag 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1036
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1026
Effective search space:   644328
Effective search space used:   644328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |