Query= MSMg01no542_j23.b1 MSMg01no542_j23.b1 CHROMAT_FILE:
MSMg01no542_j23.b1 PHD_FILE: MSMg01no542_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:43 2005
(612 letters)
>mm_chr1_134537644_134538655
Length = 1012
Score = 1098 bits (568), Expect = 0.0
Identities = 598/608 (98%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 6 ggaattcatggaacctatgtgatcccaagacagacttgggcactctccatttaacagatg 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ggaattcatggaacccatgtgatcccaagacagacttgggcactctccatttaacagatg 753
Query: 66 accaaaggaggtgggaggtgaaggtggcctccaagaaggcctcatgtggctctaaagcca 125
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 accgaaggaggtgggaggtgaaggtggcctccaagaaggcctcatgtggctctaaagcca 693
Query: 126 gacccctcccaccccagtaacagctatccaagaggagtctacacttctgggtgacagaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gacccctcccaccccagtaacagctatccaagaggagtctacacttctgggtgacagaga 633
Query: 186 ccagtaatgaccatgaactgatccccgaagcaagctgggtaagacggctgctgcctgagc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ccagtaatgaccatgaactgatccccgaagcaagctgggtaagacggctgctgcctgagc 573
Query: 246 ttgtgtatacacggaaggaggaggagaggagagctgtgagacaggcgttcccatggtgac 305
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgtgtatacaaggaaggaggaggagaggagagctgtgagacaggcgttcccatggtgac 513
Query: 306 cgtctgtggttggctcaaggagagttctcattaacagccaggcagacaatctaataagca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cgtctgtggttggctcaaggagagttctcattaacagccaggcagacaatctaataagca 453
Query: 366 tcgtgataagggcgtgtccctggagaggcgtgtgcagaggaaattgggttatcgagaata 425
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 452 tcgtgataagggcgtgtccctggagaggcgtgtgcagaggaaattgggttatcaagaata 393
Query: 426 tggtgaaggttcacttctcttctgccgcttctcactcacctgccgttggatgcccagggc 485
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggtgaaggctcatttctcttctgccgcttctcactcacctgccgttggatgcccagggc 333
Query: 486 tggtgggggagggacacctgcagagtgcatacagaaacaaatggtatggacttctacatt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tggtgggggagggacacctgcagagtgcatacagaaacaaatggtatggacttctacatt 273
Query: 546 gaaaaat-atggatttccaagctctactggagatggggatacaacaggaagcccaagtac 604
| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 g-aaaataatggatttccgagctctactggagatggggatacaacaggaagcccacgtac 214
Query: 605 tgcctgag 612
||||||||
Sbjct: 213 tgcctgag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_j23.g1 MSMg01no542_j23.g1 CHROMAT_FILE:
MSMg01no542_j23.g1 PHD_FILE: MSMg01no542_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:43 2005
(577 letters)
>mm_chr1_134343634_134344610
Length = 977
Score = 1054 bits (545), Expect = 0.0
Identities = 569/577 (98%)
Strand = Plus / Plus
Query: 1 tgtaagggaactcagcaataaggttggttttgagtttgtagatgtccgaaggcaacagga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tgtaagggaactcagcaataaggttggttttgagtttgtagatgtccgaaggcagcagga 260
Query: 61 attttgtgcctagtgacagttaaccagtctctacttacacctctgtgacttagtttcaga 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttgtgcctagtgacagtttaccagtctctacttacacctctgtgacttagtttcaga 320
Query: 121 gcgatgaggaacaactgtacactggatagaaatatacgccactcttcaagggagagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgatgaggaacaactgtacactggatagaaatatacgccactcttcaagggagagagag 380
Query: 181 aaacaagagcagaaaccataggataggaaaaaggatttatttcaaaagggccttatgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaagagcagaaaccataggataggaaaaaggatttatttcaaaagggccttatgcaa 440
Query: 241 acatttttacaagtttagattaagatgaagttctgtgcgagtaatgccaccacagacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatttttacaagtttagattaagatgaagttctgtgcgagtaatgccaccacagacaca 500
Query: 301 agtgctctgggaagacgggtgattgcttcctctcatgtgagagcaaacttcaggcaggca 360
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgctcggggaaggcgtgtgattgcttcctctcatgtgagagcaaacttcaggcaggca 560
Query: 361 gctgagggccaggcttcccttttcactgcttcatcatggttctgtttttgctctttgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgagggccaggcttcccttttcactgcttcatcatggttctgtttttgctctttgaga 620
Query: 421 cagggtctctacatagctctgcctgtgaactcctttgtacgccaggctgaccttgaactc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cagggtctctacatagctctgcctgtgaactcctttgtacgccaggctgaccttgagctc 680
Query: 481 acagagatctgcctgactctgcttcctgagtgctgggattaaacgtgctcatctccgtgc 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 acagagatctgcctgactctgcttcctgagtgctaggattaaacgtgctcatctccgtgc 740
Query: 541 tcagctttcattcttagctctggcttctacctgtgta 577
||| |||||||||||||||||||||||||||||||||
Sbjct: 741 tcaactttcattcttagctctggcttctacctgtgta 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
