Query= MSMg01no542_k03.b1 MSMg01no542_k03.b1 CHROMAT_FILE:
MSMg01no542_k03.b1 PHD_FILE: MSMg01no542_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:44 2005
(585 letters)
>mm_chr1_196147732_196148716
Length = 985
Score = 984 bits (509), Expect = 0.0
Identities = 574/621 (92%), Gaps = 39/621 (6%)
Strand = Plus / Plus
Query: 4 ggaattcgggggaagggggggatcaagagggcaagagagctcttgatggtttatttaaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcgggggaagggggggatcaagagggcaagagagctcttgatggtttatttaaga 263
Query: 64 tcattttacattctggccaactcctactattttctgtgtgtttagaggaaagctggacac 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 264 tcattttacattctggccaactcctactattttctatgtgtttagaggaaagctggatac 323
Query: 124 tgttttttcccaggtattttgactaccacacacttgccatgtcttgtccttctactggga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttttttcccaggtattttgactaccacacacttgccatgtcttgtccttctactggga 383
Query: 184 atgtccttctccctgccctgctctcagaagcacctccatgctaacactttttctcattgc 243
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 atgcccttctccctgccctgctctcagaagcacctccatgctaacactttttttcattgc 443
Query: 244 taacaaaatgctcaaaaagcattttgacaaaatcaagtgaaaacaggaggcttatttatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taacaaaatgctcaaaaagcattttgacaaaatcaagtgaaaacaggaggcttatttatt 503
Query: 304 tggttggcagtggaaaggtacagtcaaatatgacccaatagtaaaggcagtgggagattg 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 tggttggcagtggaaaggtacagtcaaatatgacccaatagtaaaggcagtgggagcttg 563
Query: 364 aagcagctggtcacactgcattcacattcagaaagcaaacaaaggtgaatgctcatagtt 423
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 aagcagctggtcacactgcattcacatttggaaagcaaacaaaggtgaatgctcatagtt 623
Query: 424 agctagctttctctct---------------------------------------ttttt 444
|||||||||||||||| |||||
Sbjct: 624 agctagctttctctctctctctctctctctctctctctctctctctctctctctcttttt 683
Query: 445 aatgcagtctgagaactgagctcatgagatggcgtcatccatatttagggttgatccttt 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tatgcagtctgagaactgagctcatgagatggcgtcatccatatttagggttgatccttt 743
Query: 505 catctccattaactcaatctggtaaccccctcatacactttcctagaattttgtcttcta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catctccattaactcaatctggtaaccccctcatacactttcctagaattttgtcttcta 803
Query: 565 tgtgattcttgattctgtcag 585
|||||||||||||||||||||
Sbjct: 804 tgtgattcttgattctgtcag 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k03.g1 MSMg01no542_k03.g1 CHROMAT_FILE:
MSMg01no542_k03.g1 PHD_FILE: MSMg01no542_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:44 2005
(666 letters)
>mm_chr1_196310795_196311860
Length = 1066
Score = 1073 bits (555), Expect = 0.0
Identities = 573/579 (98%)
Strand = Plus / Minus
Query: 1 aggcatagatgcttgatctgtgactgagctgtgatatttcttttccctatattatatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aggcatagatgcttgatctgtgactgagctgtgatatttcttttccctatattatatttt 520
Query: 61 ctgtaaaggactagagggcaaatatttcatgtttctctcttgcttattattatggttggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctgtaaaggactagagggcaaatatttcatgtttctctcttgcttattattatggttggc 460
Query: 121 aagtattatattatttttgttttgcttttcttagtatttcaaaatataattaatttttgg 180
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 459 aaatattatattatttttgttttgcttttcttagtattccaaaacataattaatttttgg 400
Query: 181 cttatttcacacacaaacaagtgtgtgtgtgataaatggctttgttctgtttgggatcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cttatttcacacacaaacaagtgtgtgtgtgataaatggctttgttctgtttgggatcgg 340
Query: 241 tactttttctcactgagattacatagtaagggaactgttgcattagcacattgatgaaac 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tacattttctcactgagattacatagtaagggaactgttgcattagcacattgatgaaac 280
Query: 301 acatggaattggacaatgtgctagtaattcctaccagataaaaacccagtactgcagttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 acatggaattggacaatgtgctagtaattcctaccagataaaaacccagtactgcagttc 220
Query: 361 tacagcaggctgacctccccaacctagagttatcttaaggaaggaactttagttgagaaa 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tacagcaggttgacctccccaacctagagttatcttaaggaaggaactttagttgagaaa 160
Query: 421 atgcctccatgagctccagctgtagggcattttctttattagtgattagtgggaaacagc 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atgcctccatgagctccagctatagggcattttctttattagtgattagtgggaaacagc 100
Query: 481 ccagtccattgtgggtggtgccatctctgggctgatggtcctgggtccaataaggaagca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ccagtccattgtgggtggtgccatctctgggctgatggtcctgggtccaataaggaagca 40
Query: 541 tgctgagcaagtcacaaatgttgaacaagcatgtaagca 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tgctgagcaagtcacaaatgttgaacaagcatgtaagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
