Query= MSMg01no542_k18.b1 MSMg01no542_k18.b1 CHROMAT_FILE:
MSMg01no542_k18.b1 PHD_FILE: MSMg01no542_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:47 2005
(680 letters)
>mm_chr1_35110865_35111944
Length = 1080
Score = 1094 bits (566), Expect = 0.0
Identities = 590/598 (98%)
Strand = Plus / Minus
Query: 1 gaccctgacctaaagtaaaaagtgtgggttgccctgtgaggaacaacacccaaggttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaccctgacctaaagtaaaaagtgtgggttgccctgtgaggaacaacacccaaggttgac 539
Query: 61 ttctggtcttcattcatacatgacttcccagtctcctctgtgcagctgtatgctttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttctggtcttcattcatacatgacttcccagtctcctctgtgcagctgtatgctttaaat 479
Query: 121 ggatatgttggatacataaagtattccattaaagctttaagttacttttcctgggtgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 478 ggatatgttggatacataaagtattccattaaagctttaagttacttttcctgggagatg 419
Query: 181 ccagaacttttgagcaatgtttcttcgatctatggttctcagtaagcccagaaacatctg 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 ccagaacttttgagcaatgtttcttcgatctatggttctcaataagcccagaaacatctg 359
Query: 241 tgcttgttttcatcagtagctggtgtcatacatcagcaaatcatgaagttggcccagtct 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgcttgtttttatcagtagctggtgtcatacatcagcaaatcatgaagttggcccagtct 299
Query: 301 agctgcctggagaggcgttatgatggtctgtatatgctctttccagggagtgtcactatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agctgcctggagaggcgttatgatggtctgtatatgctctttccagggagtgtcactatt 239
Query: 361 agaaggtgtgacaatgttggagtaggtgtgctacctaggccttgggctttaagactctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agaaggtgtgacaatgttggagtaggtgtgctacctaggccttgggctttaagactctca 179
Query: 421 tttagctgcctggaagctagtcttctcctagcagccttcagatgaagatgtagaaatttc 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 178 tttagctgcctggaagctagtcttctcctggcagccttcagatgaagatgtagaaatcta 119
Query: 481 ggcttcttctgcactatgcctgtctggatgctgccatttcccaccttgatgataatggat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ggcttcttctgcactatgcctgtctggatgctgccatttcccaccttgatgataatggat 59
Query: 541 tgaatctctgaacctgcaacccagccccaattagatgtcctttataatagttgccttg 598
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 58 tgaatctctgaacctgtaacccagctccaattagatgtcctttataatagttgccttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k18.g1 MSMg01no542_k18.g1 CHROMAT_FILE:
MSMg01no542_k18.g1 PHD_FILE: MSMg01no542_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:47 2005
(384 letters)
>mm_chr1_34932385_34933168
Length = 784
Score = 700 bits (362), Expect = 0.0
Identities = 376/382 (98%), Gaps = 3/382 (0%)
Strand = Plus / Plus
Query: 1 aggcagctttccattttttttcttccttattggcgtctctccggcttctggagggtagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcagctttccattttttttcttccttattggcgtctctccggcttctggagggtagcc 260
Query: 61 taggtcacagtgtatggatcccctccatctccctggaaacctccgagtaagaaacgggag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 taggtcacagtgtatggatcccctccatctctctggaaacctccgagtaagaaacgggag 320
Query: 121 ggaaccaaaggcattcttctctgtgatcgtgaggtcatatttgtcttagttatttgtcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaccaaaggcattcttctctgtgatcgtgaggtcatatttgtcttagttatttgtcta 380
Query: 181 ttactgtgatgaaacactatgaccaaggcaacttatagaagaaagagtttattggggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactgtgatgaaacactatgaccaaggcaacttatagaagaaagagtttattggggctt 440
Query: 241 acagttacagaaggtgagtccctgactgtcatggaagggcccagacaggcatgatcctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagttacagaaggtgagtccctgactgtcatggaagggcccagacaggcatgatcctgg 500
Query: 301 aacaatagctgaggacgtacggccctatctgcaaataggaggtcgggggtggggtggggc 360
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaatagctgagaacgtatggccctatctgcaaataggaggtcgggggtggggtggggc 560
Query: 361 agggggagtgaagggagggagg 382
||||| ||||||||||||||
Sbjct: 561 agggg---tgaagggagggagg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
