Query= MSMg01no542_n15.b1 MSMg01no542_n15.b1 CHROMAT_FILE:
MSMg01no542_n15.b1 PHD_FILE: MSMg01no542_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:01 2005
(627 letters)
>mm_chr1_41884379_41885405
Length = 1027
Score = 1129 bits (584), Expect = 0.0
Identities = 614/624 (98%), Gaps = 2/624 (0%)
Strand = Plus / Minus
Query: 5 gaattcattaatatagataaaattattctctttataataaatatgggtaaacgttttaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattcattaatatagataaaattattctctttataataaatatgggtaaacgttttaaa 768
Query: 65 tattaggaattagtgttgaatatcttaaattagtgcttgcctaaagtttcaaagaaacag 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 767 tattaggaattagtgttgaatatcttaaattagtgcttgcctaatgtttcaaagagacag 708
Query: 125 tcatttttactacagaagccattttaccagaattttaactttccagaaaacatattttgc 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 707 tcatttttactacagaagccattttatcagaattttaactttccagaaaacatattttgc 648
Query: 185 aagatgccataatcactcaagtctaagatacacgattaaaattttgtctaatgctttcta 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 647 aagatgccataatcactcaagtctaagatacatgattaaaattttgtctaatgctttcta 588
Query: 245 aatttacttgggtaaatctgtgaaaatttagaaaaaaatcattgagacattcttcctagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aatttacttgggtaaatctgtgaaaatttagaaaaaaatcattgagacattcttcctagt 528
Query: 305 tgcaaatagacattctaggcaaaatatatcaca-gtcacacatctacttattttcaaatt 363
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct: 527 tgcaaatagacattctaggtaaaatatatca-atgtcacacatctacttattttcaaatt 469
Query: 364 gatcatctctattctttttaatggtgacatcacatagaatttatcttaccatcataacat 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 468 gatcatctctattctttttaatggtgacatcccatagaatttatcttaccatcataacat 409
Query: 424 ttatgttgatttgaaatcaatttaaaagcttagttatgttttcatcctttggcaaaagtt 483
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttatgttgatttgaaatcagtttaaaagcttagttatgttttcatcctttggcaaaagtt 349
Query: 484 cttgttagttaattgtggcaagaatctttccatttgtcttagagttgatgaaatgaaggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cttgttagttaattgtggcaagaatctttccatttgtcttagagttgatgaaatgaaggt 289
Query: 544 tctctgctttgcaggtgcctgctggcaagggctaggaatcactctgattggtcacgctga 603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 288 tctctgctttgcaggtgcctgctggcaagggctaggaatcactctaattggtcacgctga 229
Query: 604 ctggaaaaattacacgaagctggc 627
||||||||||||||||||||||||
Sbjct: 228 ctggaaaaattacacgaagctggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_n15.g1 MSMg01no542_n15.g1 CHROMAT_FILE:
MSMg01no542_n15.g1 PHD_FILE: MSMg01no542_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:01 2005
(594 letters)
>mm_chr1_41711222_41712214
Length = 993
Score = 1065 bits (551), Expect = 0.0
Identities = 584/595 (98%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 ttggatgccagcagggggagaaagcttgtggtgtattctggactggttagcttgcatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttggatgccagcagggggagaaagcttgtggtgtattctggactggttagcttgcatttg 259
Query: 61 aaagggacactcacaggtatgtcacttgctactttctaagcattgagcagtgttttttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagggacactcacaggtatgtcacttgctactttctaagcattgagcagtgttttttag 319
Query: 121 aatttacaggactctggatctcagcctcagaaatacagatttgactatactagttgatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatttacaggactctggatctcagcctcagaaatacagatttgactatactagttgatac 379
Query: 181 attatgtttttatattttgttttag-cctgtctggcaatcaaagagcttttagattgatg 239
|||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct: 380 attatgtttttatattttgtttcaggcctgtctggcaatcaaagagcttttaggttgatg 439
Query: 240 aaagcaagcactcatttggtttaagtatacccattttctattgtcaccatagctataaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagcaagcactcatttggtttaagtatacccattttctattgtcaccatagctataaat 499
Query: 300 ttttgtttagcatccacttgtttaggacagtagcttctttgttaaaacctctgtcttggg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atttgtttagcatccacttgtttaggacagtagcttctttgttaaaacctctgtcttggg 559
Query: 360 ctaactatgacactttttctttgggtataatactttttcatgactcattaaaagaatgat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctaactatgacactttttctttgggtataatactttttcatgactcattaaaagaatgat 619
Query: 420 ctggctttttaaattatttatttatttattgtattgcatgtgtcagcatatgcatttgta 479
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 ctggcttttcaaattatttatttatttattttattgcatgtgtcagcatatgcatttgta 679
Query: 480 tacgtgtgtgggtattcacagacgcctggaaatagcaacagcatcggatctctagagttc 539
|| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacatgtgtggatatccacagacgcctggaaatagcaacagcatcggatctctagagttc 739
Query: 540 gatgtggttgtacttcaacatatgtggggggttgaggaccaaatcctggtcctca 594
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 740 gatgtggttgtacttcaacatatgtggggg-ttgaggaccaaatcctggtcctca 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
