TTTTTTCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAGAATTACCTTCAATTCTTTGCCCTTTTGATATATAA
AAGGCCATAAGAAAGGATTCTAGTACATATTATTCACAAACAAATAAGTG
TACAAAATGAAGAATGAGAAACAATATGAGCTGCAGACCAAGAGTTATGC
ATAAAAATGTTTACAGAGCCTTAAGTACTCTGAACATCATTAGAAATCAA
TGTCTTTCAAAAGGAACATTAGTCATGTAACCCTTTTGAGTACTTATTTT
CACAGAAAATCAGGCAACTGAGAATTTGCATTTATCAGAGTTTAATGATG
TTGGAAAATAGATTATATATAATACAACCAAACAGAATGAGATATAAAGG
TACTTTATATGAATTTTAATCCTCTGTAAATGAAAATTATAAATATATTG
GAAAGAATTGCTAGAAGATGGAAATCTGTGTTCATGTCTGCTTCTGCTCC
TTCCAAAATTCCCTTGGAACTGACACTAACCAAACGAATGCCACAGTATA
TTGTGGCAGCTTGGGGACAAACCAGGTATTCACAGAGACATCACCTGGTA
AAGGGGCAATAGTGCATTGTCCTAACATGGGATTTTTTTCACTCAGAAAT
GTATCTTGAACAGGTATTACATTTACATAAGAATTTCTTGTATGTATATG
CATGTGTAATATGGTGTCCTTGGTTACTTTAATA

AAAAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAT
ATGGATGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAACCAACCCTGAGATTCCACCTCACACCAGTCAAAATGG
CTAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTTAGGCGGTTCCTCAGAAAATTGGACATTGTACTACAGG
AGGATCCCGAAATACCTCTCCTGGGCATATGTCCAGAAGATGTCCCAACC
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTTTTTATAAT
AGCCAGAGCTGGAAAGAACCCAGATGCCCCTCAACAAAGGAATGGATACA
GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGATGTACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCTGAAACCTAGGATACCCAAGATATAAGATACAA
TTTGCTAAATGCATGANATTCAAGAAGAACGAAGA

Query= MSMg01no542_o07.b1 MSMg01no542_o07.b1 CHROMAT_FILE:
MSMg01no542_o07.b1 PHD_FILE: MSMg01no542_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:04 2005
         (682 letters)



>mm_chr1_114798718_114799800
          Length = 1083

 Score = 1292 bits (668), Expect = 0.0
 Identities = 677/680 (99%), Gaps = 1/680 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctagaattaccttcaattctttgcccttttgatatataaaaggccataagaaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagaattaccttcaattctttgcccttttgatatataaaaggccataagaaag 263

                                                                       
Query: 64  gattctagtacatattattcacaaacaaataagtgtacaaaatgaagaatgagaaacaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gattctagtacatattattcacaaacaaataagtgtacaaaatgaagaatgagaaacaat 323

                                                                       
Query: 124 atgagctgcagaccaagagttatgcataaaaatgtttacagagccttaagtactctgaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgagctgcagaccaagagttatgcataaaaatgtttacagagccttaagtactctgaac 383

                                                                       
Query: 184 atcattagaaatcaatgtctttcaaaaggaacattagtcatgtaacccttttgagtactt 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 atcattagaaatcaatgtctttcaaaaggaacattagtcatgtaacccctttgagtactt 443

                                                                       
Query: 244 attttcacagaaaatcaggcaactgagaatttgcatttatcagagtttaatgatgttgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttcacagaaaatcaggcaactgagaatttgcatttatcagagtttaatgatgttgga 503

                                                                       
Query: 304 aaatagattatatataatacaaccaaacagaatgagatataaaggtactttatatgaatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaatagattatatataatacaaccaaacagaatgagatataaaggtactttatatgaatt 563

                                                                       
Query: 364 ttaatcctctgtaaatgaaaattataaatatattggaaagaattgctagaagatggaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttaatcctctgtaaatgaaaattataaatatattggaaagaattgctagaagatggaaat 623

                                                                       
Query: 424 ctgtgttcatgtctgcttctgctccttccaaaattcccttggaactgacactaaccaaac 483
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtgttcatgcctgcttctgctccttccaaaattcccttggaactgacactaaccaaac 683

                                                                       
Query: 484 gaatgccacagtatattgtggcagcttggggacaaaccaggtattcacagagacatcacc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaatgccacagtatattgtggcagcttggggacaaaccaggtattcacagagacatcacc 743

                                                                       
Query: 544 tggtaaaggggcaatagtgcattgtcctaacatgggattttttt-cactcagaaatgtat 602
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 744 tggtaaaggggcaatagtgcattgtcctaacatgggattttttttcactcagaaatgtat 803

                                                                       
Query: 603 cttgaacaggtattacatttacataagaatttcttgtatgtatatgcatgtgtaatatgg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttgaacaggtattacatttacataagaatttcttgtatgtatatgcatgtgtaatatgg 863

                               
Query: 663 tgtccttggttactttaata 682
           ||||||||||||||||||||
Sbjct: 864 tgtccttggttactttaata 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space:   721056
Effective search space used:   721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)