BAC Information

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BAC

Clone NameMSMg01-542O09
Chromosome1 (Build37)
Map Location 105,238,162 - 105,238,478
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542O09.T7 (MSMg01no542_o09.b1)MSMg01-542O09.TJ (MSMg01no542_o09.g1)
ACCAG608562AG608563
length784761
length of high quality
(start - end)
320 (46 - 365)539 (75 - 613)
definitionCHROMAT_FILE: MSMg01no542_o09.b1 PHD_FILE: MSMg01no542_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:04 2005CHROMAT_FILE: MSMg01no542_o09.g1 PHD_FILE: MSMg01no542_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAGCCTTACTTATATGTTGATATGTGTATTGGTCTTGTTATG
TTTCAAAGACAATGTTTTCTTGGAATCAAACAAGACCTCTGTCTCTTACA
TTCCTTCTGTTTACCAGGGATACTGGTTTTAAGAGCAAGCAATCCCCCGG
AGCTCATGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGGCCAT
CATTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTATTTGTCTCAGTAC
AGGGCAACACCAGGGCCATGAAGTGGGAGTAGGTGGGTAGAGGAGTTGAG
GGGAGGGTATGGGGGATTNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNN
TNNNNTNNNNNNNNTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTNNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNNTTTTTTTT
TTTTTTTTTTTCNNTTTTTTTTTTNNNTTTTTTTTTTTTTTTTCTTTTTT
TTTTTGTTTTTTTTTTTGTGTTTTTGCTTTTTTG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCCTTCCATGCCAATAACAGAGG
CTTCTCAACTTCAAATAGACAAGAAGGAGTAGAAGAAAGAAAAAGGAAGA
ACAACATGATAGGAAGAAGGGAAACAAAAGAAAGATGAGGGAATTGACAG
AAGATGGAAGAGAACTTGAGAAAAGGAGAGGGGAAAGAAGGAGAAAGACA
AAGAAGAGGTACAGAATGAAGTAGAGAAAAGACAAGGAGAAGAAGAAATA
AGCAGAAGATAAGGCTCTATGGGCTCTGTGTGTGTGTGTGTATGTGTGTG
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTATGCAAAGGAACTCA
ATATTGTAGTCTTCTGAAATCTCTTCCAATCATATTCTGAGATAGTCTCT
CACTGAACTTCAAGTTTACTAACTTGCTTAGACGAATAAGCCAGAAATCT
CCAGGGATCCTCCTATTTCTTCATCTCCAGCTACTGTCAAAGGCACACCC
CTAATACCTGTTTCTTACAGAATGCTGGACATTGAATTCAGGTTGGTAGG
GTTGTACAGCAAGTTCTTTACTATCTATGTAATCCATCTCCCTATTCACT
CTATCCCTGATATAATCCACAGCATGGAATAGATATCTGATCTTTGGAGA
TCCATCCTATTATCAGCTGACACCATTTGCAACACTAGCAAAATTTTGCT
GAAAGGACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_o09.b1 MSMg01no542_o09.b1 CHROMAT_FILE:
MSMg01no542_o09.b1 PHD_FILE: MSMg01no542_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:04 2005
         (320 letters)



>mm_chr1_105238138_105238857
          Length = 720

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgagccttacttatatgttgatatgtgtattggtcttgttatgtttcaaag 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaattctctgagccataattatatgttgatatgtgtattggtcttgttatgtttcaaag 282

                                                                       
Query: 64  acaatgttttcttggaatcaaacaagacctctgtctcttacattccttctgtttaccagg 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acaacgttttcttggaatcaaacaagacctctgtctcttacattccttctgtttaccagg 222

                                                                       
Query: 124 gatactggttttaagagcaagcaatcccccggagctcatgtctctagctgcatatgtagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gatactggttttaagagcaagcaatcccccggagctcatgtctctagctgcatatgtagc 162

                                                                       
Query: 184 agaagatggcctagtcggccatcattggaaagagaggcccattggtcttgcaaactttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agaagatggcctagtcggccatcattggaaagagaggcccattggtcttgcaaactttat 102

                                                                       
Query: 244 ttgtctcagtacagggcaacaccagggccatgaagtgggagtaggtgggtagaggagttg 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 101 ttgtctcagtacagggcaacaccagggccatgaagtgggagtaggttggtagaggagttg 42

                            
Query: 304 aggggagggtatggggg 320
            |||||| |||||||||
Sbjct: 41  gggggagagtatggggg 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)