NAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTACTTCTACCATGTTGTGTTGAATCGAGGGTGCTCGGGCAG
CTAGGAGCACATGTGAAAGTACTGCCTTAAGTAGATAGCATTGACTCTGG
TACTTAAGCACTCTGGGGATGGATTTTCCCCACAAGGAACATTGCTTCTC
ATGGAGATATCGTAGGTTGTCATTGTAAGATGGTCACATTGGCATCTAAG
GTGGGAATGTATGAGCCTCCATTTCAGTGATGCTGTGGTTGACAAGCCCT
GGCTTGTTGCCCCCTGTGAAGAGAAGCCACTTGGTGTCTCAGTTTGCTGT
CCTCACTGGTTTTCTGTTGGCATCGGAAGGAGACTTACTTAATGACCTGT
ATTAAAGATGAATGCGTTCTCTAGACTGTACAAGTCTAGAAAAATATGTG
TGCATGCTCACACTGCAGTCCAGCTAGCTCACACTTTTGTTCTTTTTTAT
GTTTTTTCTTTCTCTTTTTTTTTTTTTGTTTGTCATTGACTACCTGAGAT
TATACGACCTGAGCGCTAATGAACATCTCTTGAGATTTTATTTTAGATTT
TCTAGAGAAAAGTTGTCTTTAACTTTGGAGTCGCATGACCTACACTTCAG
GAGAGGAATTTAATCTTTTAGTCCTAAAGGATATACTCCATAGCAAAAGG
TGTGTCACACTTACTAACAAAAGCTGTTTCACACTCACTAGAAAAAAGG

NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTTATATTTGCACCCCATT
TTAAAAACTGGATTATTTGGTTTGTTGGTGTTTAGTTTCATATCAGCCCT
TCATTGGGTAAGAGGTCGGTGAAGATTTTCTCCCAATCTGTAGGCTGCTG
TCTTGACATTTTGATGGTTTCCTTTTTTTAATTGGAGCTTTTCAGTTTCT
TTTTTTTTTGTTTGTTTTTTTGTTTTTTGTTTTCTTGGTTTTTCCGAGAC
AGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCA
GGCTGGCCTTGAACTCAGAAATCCGACTGCCTCTGCCTCCCAAGTGCTGG
GATTAAAGGCGTGTGGCACCACCGCCCGGCGAAGCTTTTCGGTTTCATAA
GGTCTTATGTACTAATTGACTGTCCGAGCTGTTGATGTTTGGGTGTTCTC
TTCAGGAAGTTGTCTCCTGTGCTGTGTATTCAACACTATATCCCACTTTC
TCTTCTATCAGGTTTATGGATGTATGTTGAGGTCTTTGATCCAATTGAAC
TTGAGTTTTGTGGAGGGTGATAAATATGGATCTGTTTGCATTCATCTCCA
CATAGACATCCGGTTAGACCAGCACCATTTGTTGAATATGCTTTCTTTTT
CCACTGTATAAGTTTGGCTTCTTTGTTAAACATCAAGTGTCCCTAAGN

Query= MSMg01no542_o16.b1 MSMg01no542_o16.b1 CHROMAT_FILE:
MSMg01no542_o16.b1 PHD_FILE: MSMg01no542_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:06 2005
         (690 letters)



>mm_chr1_165720329_165721418
          Length = 1090

 Score = 1133 bits (586), Expect = 0.0
 Identities = 604/610 (99%), Gaps = 1/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 81  aagtagatagcattgactctggtacttaagcactctggggatggattttccccacaagga 140
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtagatagcattgactctggtacgtaagcactctggggatggattttccccacaagga 340

                                                                       
Query: 141 acattgcttctcatggagatatcgtaggttgtcattgtaagatggtcacattggcatcta 200
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acattgcttctcatagagatatcgtaggttgtcattgtaagatggtcacattggcatcta 400

                                                                       
Query: 201 aggtgggaatgtatgagcctccatttcagtgatgctgtggttgacaagccctggcttgtt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aggtgggaatgtatgagcctccatttcagtgatgctgtggttgacaagccctggcttgtt 460

                                                                       
Query: 261 gccccctgtgaagagaagccacttggtgtctcagtttgctgtcctcactggttttctgtt 320
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gccccctatgaagagaagccacttggtgtctcagtttgctgtcctcactggttttctgtt 520

                                                                       
Query: 321 ggcatcggaaggagacttacttaatgacctgtattaaagatgaatgcgttctctagactg 380
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 521 ggcatcggaaggagacttacttaatgacccgtattaaagatgaatgcgttctctagactg 580

                                                                       
Query: 381 tacaagtctagaaaaatatgtgtgcatgctcacactgcagtccagctagctcacactttt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tacaagtctagaaaaatatgtgtgcatgctcacactgcagtccagctagctcacactttt 640

                                                                       
Query: 441 gttcttttttatgttttttctttctctttttttttttttgtttgtcattgactacctgag 500
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 641 gttcttttttatgttttttctttct-tttttttttttttgtttgtcattgactacctgag 699

                                                                       
Query: 501 attatacgacctgagcgctaatgaacatctcttgagattttattttagattttctagaga 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 attatacgacctgagcgctaatgaacatctcttgagattttattttagattttctagaga 759

                                                                       
Query: 561 aaagttgtctttaactttggagtcgcatgacctacacttcaggagaggaatttaatcttt 620
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aaagttgtctttaactttagagtcgcatgacctacacttcaggagaggaatttaatcttt 819

                                                                       
Query: 621 tagtcctaaaggatatactccatagcaaaaggtgtgtcacacttactaacaaaagctgtt 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tagtcctaaaggatatactccatagcaaaaggtgtgtcacacttactaacaaaagctgtt 879

                     
Query: 681 tcacactcac 690
           ||||||||||
Sbjct: 880 tcacactcac 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)