TCTATTTTTCCTCTATTATTCTTATTTCTCAATACTATGTATCTCTTTTC
CCAAATTGATGCGNNNTGNNGNACNTCGTTCTTTCCAGTTACATGTCTTT
TTTTACCTTCTTTTCTCTCCACCTCTCTCTCTCTCTCACTTTTTATCTTC
TCGTTTCCTCTATTTATGTTAACCTGGCGTTGTTGCTTTTTTTTCTTCTT
GTTGTCTATAGCCTATTCCGCTTCTTGGTTTTAACTTGTCTCTTTTATCA
GTTTTGTAGCTTTCTTGTTACCCCTCCATTTTTCTTTTTTCTTTCCCTGT
CCTCGCCCTATTTGGTTTCATCCGCTTTCTTCCTTATTAGTTTCTTCTTT
TTCATCTTTGTCCTCAATCACTTTTTTCTTTACTCTCATTATTCCTTCTC
TTAACTTCTTCACTTCCTTTCCACTTTCCTTTCTTTTCCATGCCCTCTTT
TTCTTTCTCTTGACTTTCATTGTTCCGTTCTCTCTGCTCTATCCTCTTGC
GCTTCCTTATTTCTTAGTCCCTTCTTCTCTTCATTCCTATTTCTTGTATT
CCTCTTACCTAATCTTCCCATTTTTGCGTCTTTTACTTTTCGCATCTTAT
TACCTTTCATCTTTTCCTTCTCCTTTCTTTTCTCATTCATCTACTTCGTA
TTTACACCTCTGCCTTCTTAGCTTTCTCTGCGATTCTTCATTAATTTCTC
CCCTTTCTGCCTTCTCACCCTCCGTCTTTTATTCCATAGTACTTCCATTA
ACCACTTCCTGCATTAACTTGTCTATTCGCTTGCTTTCATTGTCCTCGTT
TCTTACTTCTCTATAAAATTACTTGGTTGCTCTTGCTTCACCACATTAAT
TTTAGTANTCAAGANAATTTCAGTCCCTTGTCACACATCGTGCTTTTCTC
TCCCCGCATTTCTCTTTTTGTTTTCTTACTTCAAACCTGATTTCTCGCCT
TATATTCTATCACCTATCTTTGGTTTCTATTCCTCGCTGAATGATTCTTC
TTGCCTTTTTATTTATTCCTACTCCCCN

AAATCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTAGCAATGTCCAT
AAGAAAAGATACTGAATCAAACCAGGTAAAGGATGAAAATATATATTTAG
AATGTATGGGCCTCTACCTTCAAGAAAACATATCAATACAGATTTTCACA
TACAGAATGGCTAAAGAATAGTCTGAAATTATAGTTTTCATTTTCCTTTC
TTCATAAAAAGTCTTAGACATAAACTCAAAATTAGATTTTAAATTATTTT
TCCAAAACAGGATTTAAAATGAATACAGATGGTATGTACTAGACACCTTA
GAAATTCGCAACACACTGTGTTGGGAACTATAATTCTGTCATCTGTCTAG
GTGCCATCACCCTGACCAGGCCCCCACTTGCTGTACCACATGGGGATATG
GGAGACTTGGTGATCTCAGCAGTAATGTTCTTTCTCTCGGGACGGTGGGA
ATGGGACTCAGTTACCTTTGGGCCACTTCTATATGGCTGGAAATGCAACA
TGTAAACTCCAAAGCTGTAAAAGCTTACATGCTAATGGTTGGCAAGAAGG
CAAATAAACACATAAACAGAGAAAAAGGAAGATGGGAAGTCCTGACTGCT
TTCCAAACAGTACCTCCTTCCTGATTTGTAGTTTTATTGTCTGTTTCCTT
GATAGAAGGATGCCACAGACTTATAACCGACTTCTTGC

Query= MSMg01no543_a01.g1 MSMg01no543_a01.g1 CHROMAT_FILE:
MSMg01no543_a01.g1 PHD_FILE: MSMg01no543_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:13 2005
         (651 letters)



>mm_chr1_4828410_4829459
          Length = 1050

 Score = 1228 bits (635), Expect = 0.0
 Identities = 647/651 (99%), Gaps = 1/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattagcaatgtccataagaaaagatactgaatcaaaccaggtaaaggatgaaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttattagcaatgtccataagaaaagatactgaatcaaaccaggtaaaggatgaaaatata 791

                                                                       
Query: 61  tatttagaatgtatgggcctctaccttcaagaaaacatatcaatacagattttcacatac 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tattcagaatgtatgggcctctaccttcaagaaaacatatcaatacagattttcacatac 731

                                                                       
Query: 121 agaatggctaaagaatagtctgaaattatagttttcattttcctttcttcataaaaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 agaatggctaaagaatagtctgaaattatagttttcattttcctttcttcataaaaagtc 671

                                                                       
Query: 181 ttagacataaactcaaaattagattttaaattatttttccaaaacaggatttaaaatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttagacataaactcaaaattagattttaaattatttttccaaaacaggatttaaaatgaa 611

                                                                       
Query: 241 tacagatggtatgtactagacaccttagaaattcgcaacacactgtgttgggaactataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tacagatggtatgtactagacaccttagaaattcgcaacacactgtgttgggaactataa 551

                                                                       
Query: 301 ttctgtcatctgtctaggtgccatcaccctgaccaggcccccacttgctgtaccacatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttctgtcatctgtctaggtgccatcaccctgaccaggcccccacttgctgtaccacatgg 491

                                                                       
Query: 361 ggatatgggagacttggtgatctcagcagtaatgttctttctctcgggacggtgggaatg 420
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 490 ggatatgggagacttggtgatctcagca-tgatgttctttctctcgggacggtgggaatg 432

                                                                       
Query: 421 ggactcagttacctttgggccacttctatatggctggaaatgcaacatgtaaactccaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggactcagttacctttgggccacttctatatggctggaaatgcaacatgtaaactccaaa 372

                                                                       
Query: 481 gctgtaaaagcttacatgctaatggttggcaagaaggcaaataaacacataaacagagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gctgtaaaagcttacatgctaatggttggcaagaaggcaaataaacacataaacagagaa 312

                                                                       
Query: 541 aaaggaagatgggaagtcctgactgctttccaaacagtacctccttcctgatttgtagtt 600
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaaggaagacgggaagtcctgactgctttccaaacagtacctccttcctgatttgtagtt 252

                                                              
Query: 601 ttattgtctgtttccttgatagaaggatgccacagacttataaccgacttc 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttattgtctgtttccttgatagaaggatgccacagacttataaccgacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space:   666640
Effective search space used:   666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)