Query= MSMg01no543_a06.b1 MSMg01no543_a06.b1 CHROMAT_FILE:
MSMg01no543_a06.b1 PHD_FILE: MSMg01no543_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:14 2005
(608 letters)
>mm_chr1_137916555_137917560
Length = 1006
Score = 998 bits (516), Expect = 0.0
Identities = 586/618 (94%), Gaps = 20/618 (3%)
Strand = Plus / Plus
Query: 5 gaattcattcttattcgcttacttaaaaaaacaaaacaaaacaaaa----------agca 54
||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 195 gaattcattcttagtcgcttacttaaaaaaacaaaacaaaacaaaacaaaacaaaaagca 254
Query: 55 ttgaatgaccaaggattcattcaggtaaagaaaaccagtgaaaggaagtataaaca-a-t 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 255 ttgaatgaccaaggattcattcaggtaaagaaaaccagtgaaaggaagtataaacacagt 314
Query: 113 gttctagaaggaatagtttaaggagttagaattgttcggaagagagagagacctggagac 172
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 315 gttctagaaggaatagtttaaggagttagaatcgttcggaagagagaga--cctggagac 372
Query: 173 acattcagtggatattcaatcagggagaaaggc--ccgtgctgaggagaaggggcatttg 230
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 373 acattcagtggatattcaatcagggagaaaggctgccgtgctgaggagaagggacatttg 432
Query: 231 ggattggaaccggaaaggcttgggatggtgtcatagagtagaagtagggccagtgaatgg 290
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 433 ggattggaactggaaaggcttgggatggtgtcatagag---aagtagggccagtgaatgg 489
Query: 291 aagcttcaggggaatggacctcagcgtgggttaaaagccatctccggcgctgctagttct 350
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 490 aagcttcaggggaatggacctcagcgtgggttaaaagccatctccagcattgctagttct 549
Query: 351 aggatgggaggcttcatccttgaagacatcagcgcaccgaccgggtagggtcacagcaag 410
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 aggatgggaggcttcatccttgaagacatcagcgtaccgaccgggtagggtcacagcaag 609
Query: 411 gcattggatggggatgggtcaaggttgccgctacctgtacatcaaggatcactaggtgag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gcattggatggggatgggtcaaggttgccgctacctgtacatcaaggatcactaggtgag 669
Query: 471 ctttgagaaaatacacagtcctggctggtactctcctgccaagatttaattcagcaaata 530
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 670 ctttgagaaaatacacagtc-tggctggtactctcctgccaagatttaattaagcaaata 728
Query: 531 tggtagtggtggagggctaacctttgcttggagtccttgaggtgcccataatgccactga 590
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 729 cggtagtggtggagggctaacctttgcttggaatccttgaggtgcccataatgccactga 788
Query: 591 tccagagaacatttgaga 608
||||||| ||||||||||
Sbjct: 789 tccagagcacatttgaga 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space: 595608
Effective search space used: 595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_a06.g1 MSMg01no543_a06.g1 CHROMAT_FILE:
MSMg01no543_a06.g1 PHD_FILE: MSMg01no543_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:14 2005
(573 letters)
>mm_chr1_138085708_138086675
Length = 968
Score = 911 bits (471), Expect = 0.0
Identities = 486/493 (98%), Gaps = 5/493 (1%)
Strand = Plus / Minus
Query: 1 tcttggaggatacagaggcctgactagttgggggggggtgcgtttatgcagtgatctcag 60
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 488 tcttggaggatacagaggcctgactagtt---ggggggt--gtttatgcagtgatctcag 434
Query: 61 gaattggtgtaatcaaaccactgaggctgttgatcacaaggcagataaacccctgagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaattggtgtaatcaaaccactgaggctgttgatcacaaggcagataaacccctgagtcc 374
Query: 121 ttatcggagaggcttagctcagcagacatccttagctcagcagacatggggtccacagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttatcggagaggcttagctcagcagacatccttagctcagcagacatggggtccacagga 314
Query: 181 gcctttggtttctaaagcattcagctggctgtgtaagcagatggcccctgagcttagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcctttggtttctaaagcattcagctggctgtgtaagcagatggcccctgagcttagctt 254
Query: 241 tgagaaacagcccagaagagtagcatacacagccagaggttgatttcctagtgcagcggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgagaaacagcccagaagagtagcatacacagccagaggttgatttcctagtgcagcggt 194
Query: 301 tctgagccctggctgcatattagaatcctctcggttctgagccctggctacatattaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tctgagccctggctgcatattagaatcctctcggttctgagccctggctacatattaaaa 134
Query: 361 tcctctcaggcagtgcttcttagccttcctaatgctgcaacccttgaacatagctcctca 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tcctctcgggcagtgcttcttagccttcctaatgctgcaacccttgaacatagctcctca 74
Query: 421 tgttgtggtgaaccccaaccatagaattagtttgttgctacatcataactataattttgt 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 73 tgttgtggtgaaccccaaccatagaattagtttgttgctacgtcataactataattttgt 14
Query: 481 tgttataaattat 493
|||||||||||||
Sbjct: 13 tgttataaattat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 968
Length adjustment: 10
Effective length of query: 563
Effective length of database: 958
Effective search space: 539354
Effective search space used: 539354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
