CCAGGAGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAGTTTACATACCCCCAAATTCTTTCCTCCTGACTTG
GAGAGACTGCCTCAGAGTACCTGTAACATATAATTTTAAAAATCATGCTA
CTGCCTTTCCAGGAGTGCATTCCACACTCTTGCTCATCCTGTCTTACTTC
TGAAATCAGGTGCTGCCAGCTCCACTCCCAGCTTGCCCAGGAGCTGTTGT
ACTCCACTGGCTCGCTCTTAGCTTCTCTCTTTTCAAATGTTATCCCCTCT
CCTGGTTTCCCCTCTCAAAATCCCCTATCCCCTCCTTCTGCTCACCAACC
TACACATTCCTGATTCCTGGTTCTGGCATTCCACTAAAGTGGGACATAGA
GGCTTTGCTTCGCAGGACTGCGNGTCTCTCCATTGATGACCAACTAGGCC
ATCCTCTGATACATATGTAGCTGGAGCCTTGAGTTCCACCTCTTTGCTTG
GTGGTTTAGTCCCTGAAAGCTCTGGGGGTACTGGTTAGTTCATACTGTTG
TTCCTTTTATGGGGCTGCAAACCCTTTCAGCTTTCTCTAGCTTCTCCATT
GGGGACACTGTAGTCAGTACAATGGTTGGCTGTGATCATGTTGAGAAAGT
GGAATACTTCTCCATTGCTGATGGGATTGCAAGCTGGTACAACCACTCTG
GAAATAATTTTCATGAAACACCAAAATTGGACGT

NAAACCGCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTT
TATCATGCATAGGTGTTGGATCTTGGCAAATGCTTTTTCCACATCTAAGG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATCTATTATG
TTGATGGATTTCCATATATTAAACCATCCCTGAATCCCTGGAATAAAACC
TACTTGGTCAGGATGGATGATTGCTTTAATGTGTTTGTTCTTGGATTCGG
TTAGCAAGAATTTTATTGAGTATTTTTGCATCTATATTCATAAGGGAAAT
TGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTTTGTGGTATAGGTATCA
GAGTCATTGTGGCTTCATAGAATAAGTTTGGTTGAGTTCCTTCTACTTCT
ATTTTGTAGAATAGTAGGTGCAGAACTGGAATTAGATCTTCTTTCATGGT
CTGGTAGAACTCTGCACTAAACCCATCTGGTCCTGTGCTTTTTTTTTTTT
TTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGATATG
GGACTTTTAAGGTTGTTAACTTGATCCTGATTTAACTTTGGTACGTGGAA
TCTGTCTATAAATATGTCCATTTCATCCAGGTTTTTCAGTTTTGTTGAGT
ATAGCCTTTTGTAGAAGGATCTGATGGTGTTTN

Query= MSMg01no543_e06.b1 MSMg01no543_e06.b1 CHROMAT_FILE:
MSMg01no543_e06.b1 PHD_FILE: MSMg01no543_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:34 2005
         (577 letters)



>mm_chr1_113250924_113251900
          Length = 977

 Score =  932 bits (482), Expect = 0.0
 Identities = 554/585 (94%), Gaps = 11/585 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagtttacatacccccaaattctttcctcctgacttggagagactgcctcag 63
           ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattctcagtttagatatccccaaattctttcctcctgacttggggagactgcctcag 263

                                                                       
Query: 64  agtacctgtaacatataattttaaaaatcatgctactgcctttccaggagtgcattccac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 agtacctgtaacatataattttaaaaatcatgctactgcctttccaggagtgcatcccac 323

                                                                       
Query: 124 actcttgctcatcctgtcttacttctgaaatcaggtgctgccagctccactcccagcttg 183
           ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actctggcttatcctgtcttagttctgaaatcaggtgctgccagctccactcccagcttg 383

                                                                       
Query: 184 cccaggagctgttgtactccactggctcgctcttagcttctctcttttcaaatgttatcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccaggagctgttgtactccactggctcgctcttagcttctctcttttcaaatgttatcc 443

                                                                       
Query: 244 cctctcctggtttcccctctcaaaatcccctatcccctccttctgctcaccaacctacac 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 cctctcctggtttcccctctcaaaaccccctatcccctccttctgctcaccaacctacac 503

                                                                       
Query: 304 attcctgattcctggttctggcattccactaaagtgggacatagaggctttgcttcgcag 363
           |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 504 attcctgattcctggtcctggcattccactaaagcgggacatagaggttttgcttcgcag 563

                                                                       
Query: 364 gactgcgngtctctccattgatgaccaactaggccatcctctgatacatatgtagctgga 423
           ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 564 gactgcgtgtctctccattgatgatcaactaggctatcctctgatacatatgtagctgga 623

                                                                       
Query: 424 gccttgagttccacctctttgcttggtggtttagtccctgaaagctctgggggtactggt 483
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccatgatttccacctctttgcttggtggtttagtccctgaaagctctgggggtactggt 683

                                                                       
Query: 484 tagttcatactgttgttccttttatggggctgcaaaccctttcagct-----------tt 532
           ||||||||||||||||| |||||||||||||||||||| ||||||||           ||
Sbjct: 684 tagttcatactgttgttgcttttatggggctgcaaaccttttcagctccttgagtccttt 743

                                                        
Query: 533 ctctagcttctccattggggacactgtagtcagtacaatggttgg 577
           |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 744 ctctagcttccccattggggacactgtactcagtacaatggttgg 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)