Query= MSMg01no543_g12.b1 MSMg01no543_g12.b1 CHROMAT_FILE:
MSMg01no543_g12.b1 PHD_FILE: MSMg01no543_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
(578 letters)
>mm_chr1_131380672_131381650
Length = 979
Score = 745 bits (385), Expect = 0.0
Identities = 406/413 (98%), Gaps = 1/413 (0%)
Strand = Plus / Minus
Query: 5 gaattctggctttgtctctcagacttgtattctgggaag-tataataatagttggcagag 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 gaattctggctttgtctctcagacttgtattctgggaagttataataatagttggcagag 362
Query: 64 agatacggtcatgggggaggactggtagcatatgcatgtgggtttgggtgcagaggtaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agatacggtcatgggggaggactggtagcatatgcatgtgggtttgggtgcagaggtaca 302
Query: 124 cacccacgagtgtatttatatatgtggaagtcagagatccaaggctgatcttcctcattt 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacccacaagtgtatttatatatgtggaagtcagagatccaaggctgatcttcctcattt 242
Query: 184 aagcctcatcttaatttttttattatgcacatgacaacatgccatgacacacatgtaaag 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagcctcatcttaatatttttattatgcacatgacaacatgccatgacacacatgtaaag 182
Query: 244 atcagaggacaatatctacaagagtcagatttgttttcttctaccatgtagttcccatag 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 atcagaggacaatatctacaagagtcagatttcttttcttctaccatgtagttcccatag 122
Query: 304 agtaaattagatcatctggcgaggcagcactcatccatcttgccagccctctgccttatt 363
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 agtaaattagatcatctggcaaggcagcactcatccatcttgccagtcctctgccttatt 62
Query: 364 ttttgagacagtgtctttcattgaccctgaagcaccctgattaactagactag 416
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 ttttgagacagtgtctttcattgaccctgaagcaccctgattaaccagactag 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_g12.g1 MSMg01no543_g12.g1 CHROMAT_FILE:
MSMg01no543_g12.g1 PHD_FILE: MSMg01no543_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
(574 letters)
>mm_chr1_131322361_131323337
Length = 977
Score = 1050 bits (543), Expect = 0.0
Identities = 568/577 (98%), Gaps = 3/577 (0%)
Strand = Plus / Plus
Query: 1 ttgcatgacttctgaaggaca-cacatgtttctgtcctttcaagggagactggtgatggc 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcatgacttctgaaggacaacacatgtttctgtcctttcaagggagactggtgatggc 260
Query: 60 taccacaaacatctcactagctctatgagtttcacttctcaagtcatcccccaacacctt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccacaaacatctcactagctctatgagtttcacttctcaagtcatcccccaacacctt 320
Query: 120 ggtttcttgtctctaaaatgaagtattagtgtgaatacttggaatgttattatgcacatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttcttgtctctaaaatgaagtattagtgtgaatacttggaatgttattatgcacatg 380
Query: 180 tgagttgcacaagaatgagcaggctgctcttcagtggtatccttagggcaatgtcacatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagttgcacaagaatgagcaggctgctcttcagtggtatccttagggcaatgtcacatg 440
Query: 240 ccaatgatgggcacattatagaagatgaagtagaacttaaagcacaataacaagaactca 299
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 441 ccaatgatgggcacattatagaagatgaagcagaacttaaagcactgtaacaagaactca 500
Query: 300 tcagccatctttaatgagccgtcttcttcatagtgtgtgtg--agatggtgctatgtgga 357
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tcagccatctttgatgagccgtcttcttcatagtgtgtgtgtgagatggtgctatgtgga 560
Query: 358 accacatgaccacagcacacttgactctctctcatccctgttccttcgggctgaaggtaa 417
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 561 accacatgaccacagcacacttggctctctctcatccctgttccttcaggctgaaggtaa 620
Query: 418 actggaatcatttctatgttttttaagttttttaccttttaaatattcagggactcagat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actggaatcatttctatgttttttaagttttttaccttttaaatattcagggactcagat 680
Query: 478 gataagaacatggttgggggaacaaaatgcagaagacagacatactttttgtaggctgaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gataagaacatggttgggggaacaaaatgcagaagacagacatactttttgtaggctgaa 740
Query: 538 tggcctttgtgtgattagaaagttgaagggaaaagga 574
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggcctttgtgtgattagaaagttgaagggaaaagga 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 977
Length adjustment: 10
Effective length of query: 564
Effective length of database: 967
Effective search space: 545388
Effective search space used: 545388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
