BAC Information

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BAC

Clone NameMSMg01-543H02
Chromosome1 (Build37)
Map Location 158,867,939 - 158,979,806
singlet/doubletdoublet
Overlap geneRalgps2, 4930439D14Rik
Upstream geneTor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Angptl1
Downstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543H02.T7 (MSMg01no543_h02.b1)MSMg01-543H02.TJ (MSMg01no543_h02.g1)
ACCAG608977AG608978
length749752
length of high quality
(start - end)		699 (51 - 749)585 (82 - 666)
definitionCHROMAT_FILE: MSMg01no543_h02.b1 PHD_FILE: MSMg01no543_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:49 2005CHROMAT_FILE: MSMg01no543_h02.g1 PHD_FILE: MSMg01no543_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,979,112 - 158,979,806)(158,867,939 - 158,868,520)
sequence
TCGATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTGTGTGCCAAATAAAGAGAAGGAGGAGGAAGAAGAAGA
GGACGAGGAAGAAAGTTCTATACCTTTAGAGCTATGCAGATATAGTGTGT
AACAGGACCCCTGTTTATTAGCCTGGACTTTTGGGGCCACTAAGACTCCA
TATGCACAAAGAGATGGGAGCTGCTGGGGCAGAGAGACCTGAGGCACAGC
CCTTCTCAGCACACACAGCTGCCAACCTCTTCTCCCTTCAGACTTCAGAT
ATCCTCAGTCAGTGAGGCAGCTTCCTCCTCCAAGTTCTGGGGTCTATAAC
ACAATGGAGAACTGCATTAAGTCCTAGGAGCAAGTGCACAGCGTAGAGCA
GCTCCCTGGAAAGAGAGCTCAAAGTGGGATGAAGGAAGAAAATAGGATGG
AAGGAAGCCTGCCAGTGAGAAGCTGGACCAGGCCAGAAAGGGTCCGAAGT
GTGGCTGGTTAGCCTGTAGAATACCAGGTAATGGGATGACCAGGCTGGGC
TGGCACTAATTGGGTCCTAGGGATATCTTAGGCCTAGGGTTGAACAATGA
AGGCAATCACTTCCTAACACTAAGGTAATTGGGTAAGCCAAACCAAGTGT
GGTGACTTGTACCTATAATCCCTACAAGAGGCTTGCCATGAATTTAAGGT
CAGCCTAGGCGATACATCAAGATCTGCCCCACCCCCAAAGTGAGCAGGG

NNCCACAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTACAGCTAGAGCTAC
ATAGTGGAGGCTCTGCCTCAAAAAAAAAAAAAAAAAAAAAGTTTCAAGTT
GCAATCAAATTATTACTACCAACAAAGCCATCTTTCACCAAAGGCAACCA
CTGCCCCAATTTTAATTGTAAGCTCGTTTTTAAAATGCACACAAATTGCA
TTCATTACTCACACATGTCTGGTTCATAGCTATCTTTTAAATTTTATTTT
CTCTCAGAATTTTTGGGTGTATCCTCCCTGATACTGTAATATCAAAAAGT
ATACTAGGATCTTGACACACAAGCAGATCTTTCAACTACTGCTGCAATCT
GGTAAATAAAAGACAGAGAACAGTATTTGCAGAAAAAGTCAAATTCCTGA
AATCAATGCATGATGAAATAGAATGGACTGGGTTTTACTATTTTAAAATT
ACTATGCCAGAATTTAAACTCAAATAACTACATTTAAACCATTCATGGGA
AGTCTAATAGACACATTTAATGTATACATGTGGCTAAGACAAGCAATTTT
CCACATTTTTGAAGCTTCATGACTACACACGTTCAGTAGAGGTTATTATT
ATTAAAATAATACTGTTTGGTTACAAATCCCACTCCTGCAGTAACAGTAT
TACACTTACTACATTTATGATGCTACAGCCCGAACAATCATATCTGGGTG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_h02.b1 MSMg01no543_h02.b1 CHROMAT_FILE:
MSMg01no543_h02.b1 PHD_FILE: MSMg01no543_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:49 2005
         (699 letters)



>mm_chr1_158978850_158979948
          Length = 1099

 Score = 1174 bits (607), Expect = 0.0
 Identities = 673/695 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgtgtgccaaataaagagaaggaggaggaagaagaagaggacgaggaagaaa 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 957 gaattctgtgtgggagaaataaagagaaggaggaggaagaagaagaggatgaggaagaaa 898

                                                                       
Query: 65  gttctatacctttagagctatgcagatatagtgtgtaacaggacccctgtttattagcct 124
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 897 gttctatacctttagagcaatgcagatatagagtgtaacaggacccctgtttattagcct 838

                                                                       
Query: 125 ggacttttggggccactaagactccatatgcacaaagagatgggagctgctggggcagag 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 837 ggacttttggggccactaagactccatacgcacaaagagatgggagctgctggggcagag 778

                                                                       
Query: 185 agacctgaggcacagcccttctcagcacacacagctgccaacctcttctcccttcagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agacctgaggcacagcccttctcagcacacacagctgccaacctcttctcccttcagact 718

                                                                       
Query: 245 tcagatatcctcagtcagtgaggcagcttcctcctccaagttctggggtctataacacaa 304
           ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 717 tcagacatcctcagtcagtgaggcagcttcctcctccaggttctgggatctatagcacaa 658

                                                                       
Query: 305 tggagaactgcattaagtcctaggagcaagtgcacagcgtagagcagctccctggaaaga 364
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 657 tggagacctgcattaagtcctaggagcaagtacacagcgtagagcagctccctggaaaga 598

                                                                       
Query: 365 gagctcaaagtgggatgaaggaagaaaataggatggaaggaagcctgccagtgagaagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 597 gagctcaaagtgggatgaaggaagaaaataggatggaaggaagcctgctggtgagaagct 538

                                                                       
Query: 425 ggaccaggccagaaagggtccgaagtgtggctggttagcctgtagaataccaggtaatgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 537 ggaccaggccagaaagggtccgaagtgtggctggttagcctgtagaataccgggtaatgg 478

                                                                       
Query: 485 gatgaccaggctgggctggcactaattgggtcctagggatatcttaggcctagggttgaa 544
           |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 477 gatgaccaggctgggctggcactaatggggtcctggggatatcttaggcctagggtagaa 418

                                                                       
Query: 545 caatgaaggcaatcacttcctaacactaaggtaattgggtaagccaaaccaagtgtggtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caatgaaggcaatcacttcctaacactaaggtaattgggtaagccaaaccaagtgtggtg 358

                                                                       
Query: 605 acttgtacctataatccctacaagaggcttgccatgaatttaaggtcagcctaggcgata 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 357 acttgtacctataatccctacaagaggcttgccatgaatttaaggtcagcctaggcaata 298

                                              
Query: 665 catcaagatctgccccacccccaaagtgagcaggg 699
           |||  ||||||||||||||||||||||||||||||
Sbjct: 297 cattgagatctgccccacccccaaagtgagcaggg 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_h02.g1 MSMg01no543_h02.g1 CHROMAT_FILE:
MSMg01no543_h02.g1 PHD_FILE: MSMg01no543_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:49 2005
         (585 letters)



>mm_chr1_158867736_158868720
          Length = 985

 Score = 1011 bits (523), Expect = 0.0
 Identities = 567/583 (97%), Gaps = 4/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   acagctagagctacatagtggaggctctgcctcaaaaaaaaaaaaaaaaaaaaa---gtt 62
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||
Sbjct: 204 acagctagagctacatagtg-aggctctgcctcaaaaaaaaaaaaaaaaaaaaaaaagtt 262

                                                                       
Query: 63  tcaagttgcaatcaaattattactaccaacaaagccatctttcaccaaaggcaaccactg 122
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaagttgcaatcaaattattattaccaacaaagccatctttcaccaaaggcaaccactg 322

                                                                       
Query: 123 ccccaattttaattgtaagctcgtttttaaaatgcacacaaattgcattcattactcaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccccaattttaattgtaagctcgtttttaaaatgcacacaaattgcattcattactcaca 382

                                                                       
Query: 183 catgtctggttcatagctatcttttaaattttattttctctcagaatttttgggtgtatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catgtctggttcatagctatcttttaaattttattttctctcagaatttttgggtgtatc 442

                                                                       
Query: 243 ctccctgatactgtaatatcaaaaagtatactaggatcttgacacacaagcagatctttc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctccctgatactgtaatatcaaaaagtatactaggatcttgacacacaagcagatctttc 502

                                                                       
Query: 303 aactactgctgcaatctggtaaataaaagacagagaacagtatttgcagaaaaagtcaaa 362
           |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 503 aacttctgctgcaatctggtgaataaaagatagagaacagtatttgcagaaaaagtcaaa 562

                                                                       
Query: 363 ttcctgaaatcaatgcatgatgaaatagaatggactgggttttactattttaaaattact 422
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcctgaaatcaatgcatggtgagatagaatggactgggttttactattttaaaattact 622

                                                                       
Query: 423 atgccagaatttaaactcaaataactacatttaaaccattcatgggaagtctaatagaca 482
           |||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||
Sbjct: 623 atgccagaatttaagctcaaataactatacttaaaccattcatgggaactctaatagaca 682

                                                                       
Query: 483 catttaatgtatacatgtggctaagacaagcaattttccacatttttgaagcttcatgac 542
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catttaatatatacatgtggctaagacaagcaattttccacatttttgaagcttcatgac 742

                                                      
Query: 543 tacacacgttcagtagaggttattattattaaaataatactgt 585
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 743 tacacacattcagtagaggttattattattaaaataatactgt 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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