Query= MSMg01no543_k12.b1 MSMg01no543_k12.b1 CHROMAT_FILE:
MSMg01no543_k12.b1 PHD_FILE: MSMg01no543_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:06 2005
(606 letters)
>mm_chr1_165846070_165847074
Length = 1005
Score = 1118 bits (578), Expect = 0.0
Identities = 599/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 1 atttgcttggtttctcaagtaaagttttcaatatcttacaatcaatgaattattttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 805 atttgcttggtttctcaagtaaagttttcaatatcttacaatcaatgaattatttccaaa 746
Query: 61 actcattattaatcatcctattcctttcaatttcccactacccacttctatctcaagtga 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 actcattattaatcatcctatccctttcaatttcccactacccacttctatcttaagtga 686
Query: 121 acaaacagagagtcctttccttaattttcttaggtaaggcaaaaataatcagcatcctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaaacagagagtcctttccttaattttcttaggtaaggcaaaaataatcagcatcctca 626
Query: 181 catttgatattgcacattttggaagacccggacttagaagctcagtgatgctcgtgctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catttgatattgcacattttggaagacccggacttagaagctcagtgatgctcgtgctcc 566
Query: 241 atctacagagggttccgctccccggtgttctgctgcagttaacatggcatgagcgtgggt 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctacagagggttccgctgcccggtgttctgctgcagttaacatggcatgagcgtgggt 506
Query: 301 cgctcagtagactatgctaatgcataacattacttacagcatatgctcactgctagttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgctcagtagactatgctaatgcataacattacttacagcatatgctcactgctagttaa 446
Query: 361 aaagcttgtacagttactaactttgtgaaagaaacttccagacacagcatgggataaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagcttgtacagttactaactttgtgaaagaaacttccagacacagcatgggataaaaa 386
Query: 421 gcttgaggttcacttaaagtttaaagatcgcatggctcacatgaaacactaagaagttta 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gcttgaggttcacttaaagtttaaagatagcatggctcacatgaaacactaagaagttta 326
Query: 481 taagtagaaagagaaagttaaaaaaaaaaagtatgtttctcccatgtacatgagtggttc 540
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 taagtagaaagagaaagtt-aaaaaaaaaagtatgtttctcccatgtacatgagtgtttc 267
Query: 541 ctatgaaccacagtaagtatgaacacatgacttcggctcattcctttgcatgtatgccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctatgaaccacagtaagtatgaacacatgacttcggctcattcctttgcatgtatgccac 207
Query: 601 tttttt 606
||||||
Sbjct: 206 tttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space: 593020
Effective search space used: 593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_k12.g1 MSMg01no543_k12.g1 CHROMAT_FILE:
MSMg01no543_k12.g1 PHD_FILE: MSMg01no543_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:06 2005
(491 letters)
>mm_chr1_165720339_165721229
Length = 891
Score = 768 bits (397), Expect = 0.0
Identities = 415/421 (98%), Gaps = 1/421 (0%)
Strand = Plus / Plus
Query: 71 aagtagatagcattgactctggtacttaagcactctggggatggattttccccacaagga 130
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 271 aagtagatagcattgactctggtacgtaagcactctggggatggattttccccacaagga 330
Query: 131 acattgcttctcatggagatatcgtaggttgtcattgtaagatggtcacattggcatcta 190
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acattgcttctcatagagatatcgtaggttgtcattgtaagatggtcacattggcatcta 390
Query: 191 aggtgggaatgtatgagcctccatttcagtgatgctgtggttgacaagccctggcttgtt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aggtgggaatgtatgagcctccatttcagtgatgctgtggttgacaagccctggcttgtt 450
Query: 251 gccccctgtgaagagaagccacttggtgtctcagtttgctgtcctcactggttttctgtt 310
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gccccctatgaagagaagccacttggtgtctcagtttgctgtcctcactggttttctgtt 510
Query: 311 ggcatcggaaggagacttacttaatgacctgtattaaagatgaatgcgttctctagactg 370
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 511 ggcatcggaaggagacttacttaatgacccgtattaaagatgaatgcgttctctagactg 570
Query: 371 tacaagtctagaaaaatatgtgtgcatgctcacactgcagtccagctagctcacactttt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tacaagtctagaaaaatatgtgtgcatgctcacactgcagtccagctagctcacactttt 630
Query: 431 gttcttttttatgttttttctttctctttttttttttttgtttggcattgactacctgag 490
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 631 gttcttttttatgttttttctttct-tttttttttttttgtttgtcattgactacctgag 689
Query: 491 a 491
|
Sbjct: 690 a 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
