CGCTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAACTCTGTCTCACATTTGAAACAAAAATTATGTTTTACA
TGCCATATAATTAATAGTAATTGTATTATTTACTGCAGATTACAGTTGTT
TGACATAAATCCACACATATGTTGATAATAATCTACTGTATGAGTGTCTA
GTCATAACTTTTGAAATAAATGATCATCTTTTTGCTTTCCCTTTTAATTT
ACTTTTACTCCCTTTTAATGTAAATTTACTTCATTATCTTCTGTGCTAAT
GTCCAGTACAGAAATAAACATGTACTCACAAATACTATAGAATATGTACT
GAAGACAATATTTTCATAAATCAGAGAACAGAAGAACAGCACACACAACA
GGAAACATAAGTAGAACAAAGAAAGCACCACAAGAGAAATGTGAAAGGAG
AAGGCACAGAGAAGAGACAGTGCTGAGAAAGGCTGCGAAATGTGTGATCT
TTCAGACTATGAGATCTCCCATGAGGAAAGATCAAAGAACAGCAACTAGA
AGATCTGCAGAAAGAAATTTGAACAGCTAAAATTATCCCTCCTTCCCCAA
GACTACGATTTCTGGGAATTGCTTTTCTTATGTAAAGTAAAAGTGATTAT
CCTATTATCCACCAAATAATTCCATGATTCCCCAAGATAAACTGCAAATG
TAAAATATGCACAGTATTATAATGTTCCTCTACTAACTGCTTATTTTGG

NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCAATGAAGTTTATCA
AAGCTAGCTATTGCACTTTGACATGAAGGTTTGGGTATAGCACATGTCAG
TCTGGCCACTCCATCACAGAAATAACTTCCAAATGTGCAGCAGATGGCAA
TCAGATTTGACTTGAAGCTTTTGAAGATATATGTTCAGATTAGCCAGACA
TGGACTGCACAACTCAGAAATTAAAGAATGTCTAGTCTACAATAGGAATG
TGACAATAATTTGGGGTATCAAGATCAGGTGGTGACGTGAGCCATTCCCA
GAACAGCATGGGATGTGACAAGATGTGTGATGGGGTGATAGAAGGTGTTA
GCAAAGTCATGTATGAATGACACTTCATAACTTCTCTAGTAACCCTGTGG
TAGATTAACATAAATCTAAAATAGCATAACATCTGAACCAGTACTTGTGA
CAACTCCCAAATATTCACATACACGAAGGACATTTACAGCTTCTGAGTGA
GTGTGCTCTGTGGAGGAGGTTTGTAGAACCTCACCCACACTCCATATGCC
TGCTGAAATGTCCCCATTGTGATCTCGATGTGAATTAATGACAGGCATCA
ATCACTGCATTCTTACAGAGATCTGACAATGATCACTTGTAGTTTATCAA
GACAATTATTTTCCATGTAACAAATATCTTACAGCGTTCAGAAGAAAC

Query= MSMg01no543_m04.b1 MSMg01no543_m04.b1 CHROMAT_FILE:
MSMg01no543_m04.b1 PHD_FILE: MSMg01no543_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:13 2005
         (407 letters)



>mm_chr1_18134185_18134991
          Length = 807

 Score =  702 bits (363), Expect = 0.0
 Identities = 393/403 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactctgtctcacatttgaaacaaaaattatgttttacatgccatataattaa 64
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgaactctgtctcacatttgagacaaaaattatgttttacatgccatataattaa 264

                                                                       
Query: 65  tagtaattgtattatttactgcagattacagttgtttgacataaatccacacatatgttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtaattgtattatttactgcagattacagttgtttgacataaatccacacatatgttg 324

                                                                       
Query: 125 ataataatctactgtatgagtgtctagtcataacttttgaaataaatgatcatctttttg 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 ataataatctactgtattagtgtctagtcataacttttgaaataaatgatcatcttttta 384

                                                                       
Query: 185 ctttcccttttaatttacttttactcccttttaatgtaaatttacttcattatcttctgt 244
           ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 385 ctttcacttttaatttacttttactcccttttaatttaaatttgcttcattatcttctgt 444

                                                                       
Query: 245 gctaatgtccagtacagaaataaacatgtactcacaaatactatagaatatgtactgaag 304
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 actaatgtccagtacagaaataaacatgtactcacaaacactatagaatatgtactgaag 504

                                                                       
Query: 305 acaatattttcataaatcagagaacagaagaacagcacacacaacaggaaacataagtag 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 acaatattttcataaatcagagaacagaagaacagcatacacaacaggaaacataagtag 564

                                                      
Query: 365 aacaaagaaagcaccacaagagaaatgtgaaaggagaaggcac 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaaagaaagcaccacaagagaaatgtgaaaggagaaggcac 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_m04.g1 MSMg01no543_m04.g1 CHROMAT_FILE:
MSMg01no543_m04.g1 PHD_FILE: MSMg01no543_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:13 2005
         (660 letters)



>mm_chr1_18289957_18291016
          Length = 1060

 Score = 1253 bits (648), Expect = 0.0
 Identities = 657/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctcaatgaagtttatcaaagctagctattgcactttgacatgaaggtttgggtatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ctctcaatgaagtttatcaaagctagctattgcactttgacatgaaggtttgggtatagc 801

                                                                       
Query: 61  acatgtcagtctggccactccatcacagaaataacttccaaatgtgcagcagatggcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acatgtcagtctggccactccatcacagaaataacttccaaatgtgcagcagatggcaat 741

                                                                       
Query: 121 cagatttgacttgaagcttttgaagatatatgttcagattagccagacatggactgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagatttgacttgaagcttttgaagatatatgttcagattagccagacatggactgcaca 681

                                                                       
Query: 181 actcagaaattaaagaatgtctagtctacaataggaatgtgacaataatttggggtatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actcagaaattaaagaatgtctagtctacaataggaatgtgacaataatttggggtatca 621

                                                                       
Query: 241 agatcaggtggtgacgtgagccattcccagaacagcatgggatgtgacaagatgtgtgat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agatcaggtggtgacatgagccattcccagaacagcatgggatgtgacaagatgtgtgat 561

                                                                       
Query: 301 ggggtgatagaaggtgttagcaaagtcatgtatgaatgacacttcataacttctctagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggggtgatagaaggtgttagcaaagtcatgtatgaatgacacttcataacttctctagta 501

                                                                       
Query: 361 accctgtggtagattaacataaatctaaaatagcataacatctgaaccagtacttgtgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 accctgtggtagattaacataaatctaaaatagcataacatctgaaccagtacttgtgac 441

                                                                       
Query: 421 aactcccaaatattcacatacacgaaggacatttacagcttctgagtgagtgtgctctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactcccaaatattcacatacacgaaggacatttacagcttctgagtgagtgtgctctgt 381

                                                                       
Query: 481 ggaggaggtttgtagaacctcacccacactccatatgcctgctgaaatgtccccattgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaggaggtttgtagaacctcacccacactccatatgcctgctgaaatgtccccattgtg 321

                                                                       
Query: 541 atctcgatgtgaattaatgacaggcatcaatcactgcattcttacagagatctgacaatg 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctcaatgtgaattaatgacaggcatcaatcactgcattcttacagagatctgacaatg 261

                                                                       
Query: 601 atcacttgtagtttatcaagacaattattttccatgtaacaaatatcttacagcgttcag 660
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcacttgtagtttatcaaaacaattattttccatgtaacaaatatcttacagcgttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)