Query= MSMg01no543_n03.b1 MSMg01no543_n03.b1 CHROMAT_FILE:
MSMg01no543_n03.b1 PHD_FILE: MSMg01no543_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:18 2005
(630 letters)
>mm_chr1_38536885_38537917
Length = 1033
Score = 1143 bits (591), Expect = 0.0
Identities = 619/629 (98%), Gaps = 3/629 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgaaattagtttttcactcaatatggtgccacacatctggctataatctcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gaattctctgaaattagtttttcactcaatatggtgccacacatctggctataatctcaa 774
Query: 65 ctctatgggccccggcagaactagagtcatcatttaggaacaagactcaaatataaagct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctctatgggccccggcagaactagagtcatcatttaggaacaagactcaaatataaagct 714
Query: 125 tttatggactcttaaaaccttagtattatcccaataggaaactgacaactgcaaagtggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tttatggactcttaaaaccttagtattatcccaataggaaactgacaactgcaaagtggt 654
Query: 185 tcttattagtgccataaacagacaaggagagaagcacagctttcgcccctcacgtttaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tcttattagtgccataaacagacaaggagagaagcacagctttcgcccctcacgtttaaa 594
Query: 245 gcgtctcattcatccagcaggagcagccccatgtcagatgtttccagaag--cagtttga 302
|| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct: 593 gcatctcattcatccagcaagagcagccccacgtcagatgtttccagaagcacagtttga 534
Query: 303 acaaagagttcaaggtgttcatcttggagaaccgcgaggaaggcggtgctcacgtctgtg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 533 acaaagagttcaaggtgttcatcttggagaaccgcgaggaaggcggtgctcacgtctatg 474
Query: 363 tgtcctgagaggcacagcctgggtgacggcaggggtagaaggtgaatttcttaacttgga 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 473 tgtcctgagaggcacagcctgggtgacggcaggggtagaaggtgaatttcttaacttgta 414
Query: 423 tgttgcgtttcagctttacaaatacgttcttatgccctggtcgatttgaagtgaacaagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgttgcgtttcagctttacaaatacgttcttatgccctggtcgatttgaagtgaacaagc 354
Query: 483 ggtactgtgggaaagactctgagttgttcctgaacaaagagaaaaggagaccagcacggg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggtactgtgggaaagactctgagttgttcctgaacaaagagaaaaggagaccagcacggg 294
Query: 543 cccttctcccctcagttcaagaatgggatccttctgttcatttacatgattggctcattt 602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 293 cccttctcccctcagttcaagaatgggatccttctgttcatttacatgattagctcattt 234
Query: 603 ggc-ataaggacatttggcctacactatc 630
|| |||||||||||||||||||||||||
Sbjct: 233 gggtataaggacatttggcctacactatc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1033
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1023
Effective search space: 634260
Effective search space used: 634260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_n03.g1 MSMg01no543_n03.g1 CHROMAT_FILE:
MSMg01no543_n03.g1 PHD_FILE: MSMg01no543_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:18 2005
(635 letters)
>mm_chr1_38362095_38363129
Length = 1035
Score = 1205 bits (623), Expect = 0.0
Identities = 632/635 (99%)
Strand = Plus / Plus
Query: 1 ttttttttttttttttgcttcttcttctccagaatctagttattttacttggcagctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttttttttttttgcttcttcttctccagaatctagttattttacttggcagctttc 260
Query: 61 cagctttcattctttctttctgtctctttctctccctctcttccgctctccacttatcat 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cagctttcattctttctttctgtctctttctctccctctcttccactctccacttatcat 320
Query: 121 tcattcctatttatcagtgctttgaagacactcgagtcaagagtctcgatgtgatgtctg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattcctattcatcagtgctttgaagacactcgagtcaagagtctcgatgtgatgtctg 380
Query: 181 cagggtgttagaattagtaagtgaaactaatgggatttcccactaaatttgaattttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggtgttagaattagtaagtgaaactaatgggatttcccactaaatttgaattttatg 440
Query: 241 taaacaacaaataatatttttttgcatatgtatgccctaaatattgcacagaacacacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacaacaaataatatttttttgcatatgtatgccctaaatattgcacagaacacacac 500
Query: 301 tgaaaattattccttgtctatctgaaattcaaattgaactgggtgccttgtattttatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaaattattccttgtctatctgaaattcaaattgaactgggtgccttgtattttatct 560
Query: 361 ggcatctctactcagaggttgaagagaggcatctatttacacctcccagaggaggggaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcatctctactcagaggttgaagagaggcatctatttacacctcccagaggaggggaac 620
Query: 421 tttcctacagaccttcctcctgaatgttcctggcctcgaaagctttccacagcttccctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcctacagaccttcctcctgaatgttcctggcctcgaaagctttccacagcttccctt 680
Query: 481 tattttaactgtggcctacgtgctggattgcgagctccccagggcagagagcagcatggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattttaactgtggcctacgtgctggattgcgagctccccagggcagagagcagcatggc 740
Query: 541 atgggcagagtccatcggaggcactagggtctcgcacagcaccacccaaggtcagcattt 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgggcagggtccatcggaggcactagggtctcgcacagcaccacccaaggtcagcattt 800
Query: 601 gcacaaatgcctcccaggtaacaacagaccccagt 635
|||||||||||||||||||||||||||||||||||
Sbjct: 801 gcacaaatgcctcccaggtaacaacagaccccagt 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
