CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTTGAATGAAGATAATAACTGCCACCTGCTTGGATGCGGGGAT
GCATGCCTGTTGCAGTCAAGGCTGAAGGGCATTGACTGACCTGCTTGAGA
AACAAAGTCCAGAGAGTGAAAGGCACAGTACAGAAGCTTCTTTTGCAGAA
GTCCAGGTACTCCATTCAATTGCAAATTAGCAACAATCAAGCTTAGACTT
AAAGCTCCCAGTGTTGGGGAGGTGACCTTGAGAATCACAGAAAGGCTCCA
ATCTTTCTGCAAGAGGAGGCTGTGTTCTAATTTACCTTTGTTAAGTAATT
AAGAATATTTTGTATTCTTCCCTGGGATACTCTAATACTGGAATTATTAC
TAGACCAGTCCAAGATTGAGTTAGAATAACCGGTCACATGAGGGAAAGAG
AAGAATCACTAATCTTGCTAAGTCAAATTACATAGTCTCTGATGTTCTTT
TTACCATAAGGTTAAAAAGCTCGAAGCAAGGCAGCTTCACTTGTCCAAAC
TGGAAAAATAGCATGCAAGGATGGGTTGAAAACATGTACCCAAATTAGCT
TTCATGTCACTAAAGTCAGGGCACTTACCTGTCAGCCTGTCACACGAATT
ATCCATCATGCTTCTGCAGTGTTCTGTGAAGAAAACCTATGTTTTCCCCT
TTCCTAATAAGGTAGCTGTTCAAGATCAAGCCATATGCCCATAAGTAGAT
ACTTTTAAGATACTATAAGGGATTCGTTA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAGTGGCTGTACATATGCTTTTAA
GCCCAATACTTCTGCAGGAATGGGAAGTGAATGCAGAAGGATTGGTGAGC
ATCAAAATGCAACAATCTAGCTCTAGTTTTGGCTAGATAATATTTTCAAT
ATTTGGAGAGTCATGGGGTAGGATACCCAACATCTTTCCATGGTCTATGC
ACCACCATCACCACTACCCTCCAACCACCCCCCCCACACACTCAAATTCT
CATACACACATGCAGATGTGACATTATATATAGATGACTTTTAAGAATAT
TGGACTGTATACTGGAAATTCTAAGACGATAGCATTTTCTCCTTCAGTTG
GTTTTGCAAGGTATTTTATTATAATGTAAATGAAACTTTTTACAGTAAGA
GATAAATTAACATGCATTTACCCATGATAGAGGATTCATGAAAGACCAAA
TTAACCTTTCCATACAAGTCCAACCTAGTGATCTAATGAGTGCATTTATA
TTATTATAGGAATATAAATAGGGGTTACTTATGGAAATGCCGCAAAAGCA
GTTGAATTGCTGAAAAGCTCACCCTAACCTGCATTTTGAGTAATAATTAA
TCAGTCCCATAGCTTCATGCATATAAGCAGGCAGCTTGACAAGTCAGAGT
CTCCTTCATTCAGCAGTCCTTACTTGAACTTGGAGGGTACTCCTACATCT
TCTAC

Query= MSMg01no543_n18.g1 MSMg01no543_n18.g1 CHROMAT_FILE:
MSMg01no543_n18.g1 PHD_FILE: MSMg01no543_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:21 2005
         (681 letters)



>mm_chr1_115978899_115979981
          Length = 1083

 Score =  982 bits (508), Expect = 0.0
 Identities = 529/536 (98%), Gaps = 2/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 148 gatacccaacatctttccatggtctatgcaccaccatcaccactaccctccaaccacccc 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gatacccaacatctttccatggtctatgcaccaccatcaccactaccctccaaccacccc 528

                                                                       
Query: 208 c-cccacacactcaaattctcatacacacatgcagatgtgacattatatatagatgactt 266
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cacacacacactcaaattctcatacacacatgcagatgtgacattatatatagatgactt 468

                                                                       
Query: 267 ttaagaatattggactgtatactggaaattctaagacgatagcattttctccttcagttg 326
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 467 ttaagaatattggactgtatactggaaattctaagaggatagcattttctccttcagttg 408

                                                                       
Query: 327 gttttgcaaggtattttattataatgtaaatgaaac-tttttacagtaagagataaatta 385
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 407 gttttgcaaggtattttattataatgtaaatgaaacttttttacagtaagagataaatta 348

                                                                       
Query: 386 acatgcatttacccatgatagaggattcatgaaagaccaaattaacctttccatacaagt 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 347 acatgcatttacccatgatagaggattcatgaaagaccaaattaacctttccatacaagc 288

                                                                       
Query: 446 ccaacctagtgatctaatgagtgcatttatattattataggaatataaataggggttact 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccaacctagtgatctaatgagtgcatttatattattataggaatataaataggggttact 228

                                                                       
Query: 506 tatggaaatgccgcaaaagcagttgaattgctgaaaagctcaccctaacctgcattttga 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tatggaaatgccgcaaaagcagttgaattgctgaaaagctcaccctaacctgcattttga 168

                                                                       
Query: 566 gtaataattaatcagtcccatagcttcatgcatataagcaggcagcttgacaagtcagag 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gtaataattaatcagtcccatagcttcatgcatataagcaggcagcttgacaagtcagag 108

                                                                   
Query: 626 tctccttcattcagcagtccttacttgaacttggagggtactcctacatcttctac 681
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 107 tctccttcgttcagcagtccttacttgaacttggagggtattcctacatcttctac 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1083
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1073
Effective search space:   719983
Effective search space used:   719983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)