BAC Information

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BAC

Clone NameMSMg01-544E09
Chromosome1 (Build37)
Map Location 152,272,758 - 152,273,159
singlet/doubletsinglet
Overlap geneTpr
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331
Downstream geneEG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544E09.T7 (MSMg01no544_e09.b1)MSMg01-544E09.TJ (MSMg01no544_e09.g1)
ACCAG609611AG609612
length791750
length of high quality
(start - end)
120 (77 - 196)489 (77 - 565)
definitionCHROMAT_FILE: MSMg01no544_e09.b1 PHD_FILE: MSMg01no544_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:53 2005CHROMAT_FILE: MSMg01no544_e09.g1 PHD_FILE: MSMg01no544_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCCTCAGAGGAT
CCGCGGAATTCTCAACTTTTCCCTACTGAAGGACTGAGAAGCACTTGAAA
TAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACAACAGTCAGAATGGCTAGTATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATACGGAGAAAGAGGAACACTCCTCCATTGC
TGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCGATT
CCTCAGAAAATTGAACATAGTACTACCGGTACATCCAGCAATACCTCTCC
TGGGCATATATCCTGAAGATGTTCCAACTGGTAATAAGGACACATGCTCC
ACTATGTTCATTAGCTGCATATTTATAATAGCCAGTTTCTGGTAATGATC
CCAGATGTCCCTTAACTTGAGTATTTGGATACTGTTATTGTGGCACATTT
TACCTAATGGATGTTCTATTTCATCTTTCAATAACAATTTGATTTAATGA
TATCCTTTGGGTCCATTGGGATTTATTCTTGGCTGTATATTTATTTTCGA
GTTTATTTAATCCTTAAATTCAAAAATTAATTTCTTTTGATACCGCAATT
ACTTTGCATATATTGTAATCTTAATCCCCAATATAATTTTTGAATCTTCT
CATTTGGTTCTACTTTCTCATAAATAATTATATTCTACCTTGATCTGTGA
ATTACCTTTCTGCGCTGCGATTTCTTTTATATCTTTTATCT
TGATCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAGGATTGGCTCAAGGAC
TGCCTAGGACATAGGGACATTGGAGGAGGCTAATCTAACTTAGCTATATG
TCAAAAAATCAATCCTTAGAGGCACTTATAATAAAACAATACTGAAGGAA
AGCACACGGATCCGTTCTCTACTAAAGCAAGGACAGATTTGGAGCACTCG
TTATACAGGATGCCCCGGTTCCAGGTGACTAAGTTTCTGTGAACTTTTTG
CCTCGGGACTGCGTCCAAGCTTCTAGGCCTGTCACTCAAGTCACTCCTGG
AGTGGGTGTGGCAATCTGTATCTTTATAAATAGTAAGGGCTTCTGCGCTC
AGCTGGTAAGGCACAAACCTTGGCTTGCATTTGTTGTAGGTTCTGTTCGA
GCCTTTCCTTTTCCTCCCGTAGCATCTTGTTGGTCTCCATAACAACGTTC
ATTGTTTCAGTTTTCTTCATCAGCTCTTCATGTTGCGCCATTGTTTTTGC
AGTTACCTGAAACAGTGACAAACACATAGATCAACATCCAGCACTCAGAC
TCGTCTTTTTCCTACCAGTTCTAAACTTCCCAATAAAAAAGTATAGAGAA
TTTTAAACTTCAACTTGTAACTGAAACTTTTGATAGCTTGGCAGGTTATT
TTACCTGGAAACATGGTTAATTTTCAATGGAATTTTAAATAAATGTAAAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_e09.g1 MSMg01no544_e09.g1 CHROMAT_FILE:
MSMg01no544_e09.g1 PHD_FILE: MSMg01no544_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:53 2005
         (489 letters)



>mm_chr1_152272271_152273159
          Length = 889

 Score =  754 bits (390), Expect = 0.0
 Identities = 399/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 88  ccttagaggcacttataataaaacaatactgaaggaaagcacacggatccgttctctact 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ccttagaggcacttataataaaacaatactgaaggaaagcacacggatccgttctctact 830

                                                                       
Query: 148 aaagcaaggacagatttggagcactcgttatacaggatgccccggttccaggtgactaag 207
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 829 aaagcaaggacagatttggagcactcgttatacaggatgccctggttccaggtgactaag 770

                                                                       
Query: 208 tttctgtgaactttttgcctcgggactgcgtccaagcttctaggcctgtcactcaagtca 267
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 769 tttctgtgaactttttgcctcgggactgcggccaagcttctagacctgtcactcaagtca 710

                                                                       
Query: 268 ctcctggagtgggtgtggcaatctgtatctttataaatagtaagggcttctgcgctcagc 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctcctggagtgggtgtggcaatctgtatctttataaatagtaagggcttctgcgctcagc 650

                                                                       
Query: 328 tggtaaggcacaaaccttggcttgcatttgttgtaggttctgttcgagcctttccttttc 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tggtaaggcacaaaccttggcttgcatttgttgtaggttctgttcgagcctttccttttc 590

                                                                       
Query: 388 ctcccgtagcatcttgttggtctccataacaacgttcattgtttcagttttcttcatcag 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctcccgtagcatcttgttggtctccataacaacgttcattgtttcagttttcttcatcag 530

                                                     
Query: 448 ctcttcatgttgcgccattgtttttgcagttacctgaaacag 489
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctcttcatgttgcgccattgtttttgcagttacctgaaacag 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)