BAC Information

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BAC

Clone NameMSMg01-544G05
Chromosome1 (Build37)
Map Location 106,244,003 - 106,244,324
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20, Rnf152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544G05.T7 (MSMg01no544_g05.b1)MSMg01-544G05.TJ (MSMg01no544_g05.g1)
ACCAG609699AG609700
length784754
length of high quality
(start - end)
326 (51 - 376)547 (77 - 623)
definitionCHROMAT_FILE: MSMg01no544_g05.b1 PHD_FILE: MSMg01no544_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:02 2005CHROMAT_FILE: MSMg01no544_g05.g1 PHD_FILE: MSMg01no544_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACAATATTTCTAAAGGCTTTCTCAAATGTTCATTATCTC
TTGGTATAAAAATTGTAAAACTATTTTTCTTTAAAGTCAAATGATATTTT
AATCTAGTTACTCTCCCAAACTTGTAAGAAACAGACAGACAGCAATGCAG
AAGCAGCTTTGTTTACACGTGGCTTCTAAGCAAGATCTTGAGATGAAGCA
TCAGCACAAGACTATAAAACACATAGACTACAAAAAAGTTCAGCAATTAG
TCAATTATTAAAGCATATACACAGTGGTAGGGGAGGGAGGGAGGGGAAGA
ATGTGTGCCAAAGAGGCTTTGAATGTGACCATAAGAGCTACGGTAATTGT
GGTATTTGACATCTTCTCTGTCATTCCATTTTGATTTACTTTACATTTCT
TTGTCTTTCTTGACCCTTCTATGAGACTAGTTCCTATCAAGTATTTTAGA
AGCTACATCCTTTTAAATATACTCCCTCTGTTTCTTGATTATATTTGCTC
TTTTCCGCTGATATGATTATTTTGTTTTTGTCAGCATTTTTTAGACAACC
CTTTTATTTTCTTAGCAAGCATTGTATTTTAACTAATTCACCTTCACTAT
TCTTGGTTTTTTGTCCTCATTGTCTGGTGCGTTATGTGATCTGACTCTAT
TAGGAATGTTTACTTCTCTGCTCGTTTCACAGATTCTTTTTCTTTAAGTT
TTTATTCCTTGGATTCTTCCCCTAGCGTGAATAN
TCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGCAGAAGCTTATGCAGAAG
TCATGGAGTGGTTCTGATTACTGGCTTCCTTCCCATGGCTCGTTCAATCT
TCCTTCTTATACAATCTAGGACCACCAGTCCAAGGATAGTACCGCTGAAT
TAGGCTGGGCCCTCCTCTATTAACCACTAATTAAGAGAATGCCCTACAAC
TGTATCTTATATAGGCATTTTTAAAATTGAGATTCCCTCCTTTCAGATAA
CTCTAGCTCATGTGTTAACTTTATATAAAACTAGCCCACCCAAGGATAAT
ATGTTTTGGAGGAGAGATCCTGGTTTGAATTTTTATATTGCGTTTTTATT
TTCTGGTGAAATCTAGGTGTGTGAGCTTCTTTTGTTATTTCCCTGTCAGA
TGAGGACAGAAAAGGGTGGGGTAGAAGAGAGTGTGTGTAGGTGAGTTGGG
CCTAGAGGTTGGAACTGGCTTACATGGCATGAAGTCAGGTGGTCAAAAAG
GCCTAAGTTGTTATCCATTGTGCATTTCCTAGTCTATCACTCTACTGGAG
CTGGGGTAGAACTATGAAGTANGAGGAGGACATGGAGAGGGATACAGGAT
GAGGAAACCTCATCATGCTAACCACCAAAGAATGGTGTAAAGGATAGCTG
GGCATATAAGTTGGATGTGGTATGGTAGGAACCTAACATGTTAGGTGGAT
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_g05.b1 MSMg01no544_g05.b1 CHROMAT_FILE:
MSMg01no544_g05.b1 PHD_FILE: MSMg01no544_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:02 2005
         (326 letters)



>mm_chr1_106243799_106244524
          Length = 726

 Score =  569 bits (294), Expect = e-166
 Identities = 315/322 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacaatatttctaaaggctttctcaaatgttcattatctcttggtataaaaatt 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacaataaatataaaggctttctcaaatgttcattatctcttggtataaaaatt 264

                                                                       
Query: 65  gtaaaactatttttctttaaagtcaaatgatattttaatctagttactctcccaaacttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaaaactatttttctttaaagtcaaatgatattttaatctagttactctcccaaacttg 324

                                                                       
Query: 125 taagaaacagacagacagcaatgcagaagcagctttgtttacacgtggcttctaagcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagaaacagacagacagcaatgcagaagcagctttgtttacacgtggcttctaagcaag 384

                                                                       
Query: 185 atcttgagatgaagcatcagcacaagactataaaacacatagactacaaaaaagttcagc 244
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 385 atcttgagatgaagcatcagcacaagactataaaacacatagaccacaacaaagttcagc 444

                                                                       
Query: 245 aattagtcaattattaaagcatatacacagtggtaggggagggagggaggggaagaatgt 304
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 445 aattagtcaattattaaagcatatacacagaggtaggggagggagggagggggagaatgt 504

                                 
Query: 305 gtgccaaagaggctttgaatgt 326
           ||||||||||||||||||||||
Sbjct: 505 gtgccaaagaggctttgaatgt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)