NTTAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCAAATTTAAGAAGGAAAACTGAACACATAACCCTCAAA
GAAGTTGTGGCATATGTGCTATTTCTGTTGAGCAAACATATTCTCTCATA
TGTTAATATAAAGGTTATGCTCTTTAATATTTGATATTGGCATGGCTCAT
TAGATGTTCTTTTAGTTATGATCTGTCATATGATTAAATTCTACATTATG
AGAAATGGGAAGGCATGAGAAAGTTGGCTGTGAGGTTTTTATATTAGATG
ACAATTTCACAAGGCTCTTTCTTGTTCCTGTGGAGTCACATATAAATATG
GGCAGAGCCAAGATACATTACAAAGAACTTACATCCAGTTTTGAGCAATC
TTTGTGTTTTGCTGACCTTGGGATGCACTTGCCAGTTGTCATAGTATATG
CCTAACCCCCCAGAGAGAGAAGCTTTTTTCTTTCTTATATTTGTTACTAT
ATTTTGAGATTTCTTTCTTATTTAAGGTTGAGTTATACCATAAGTTTTAT
ACACACACAAACACACACACACACACACACACACACACACACACACACAT
TAATAGCTTCTTTTCTTTGGAGTTCATATATATAGAACATACCTTTCAGT
CACATAAATTTTAAGAATCTATCATTGGTGTGACTAGTCTTATATCCTAA
TTTGTAGTAAATGAAAAGGCATAAATAATAATATTTTATTAAAAAA

NTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTAAAGCCATTTGT
CCTTGGTCTCTTTCTTCGGTTGGGAGACTTAATGAATGTTTCTATTTCCT
CAGGGGGTTAAGATACAGGGGCTTATTTCAATTTTCTTGTACCTGCCAAG
ATTTGCTTTGTGACAGACTATGTGGTGCATTTTGAAGAAGGTCCTTTGAG
GTGCTGTGATTGAGGTGTGCTCTTTTGTGTTTGGGTAAAATTTTCTGTAG
ATATCTGTTAAGTCCATTTGATTCATAGCACCTATTTGTTTCACTATTTC
TTTGTTTAGTTTCTGTTAGTGGCCTTTTAATAATTATTTTACAATTTTCT
TCTTACCTAGATAGCTCCCAAATTATTTAGACTGGACTATTATATTTATC
AATCAAGCTTAAGACACACAACTGGGGAGAATTACCCTATGTCATTGTCT
AAGCTAATCTGACTACCTCCTAGGCAAAGCCCCTGAGTTACTTGCACTTG
ATCCCTTTCTCTGTTTACAGTGTTCTTCCATAGTGTTTCCCAGACTCTCT
CTGAGTGGTGATTCTCCACTTCTTTTATCTTCATAAGGTTGGAGTTAAGG
TCCTTTTCTTGTGTTTCAGTTGTGTTAGTATATCCACGGCTTACTGTAGT
AGGATAGCTGGGCTCANGTGGTGCCATATTACCCTTGCTTTTGTTGAT

Query= MSMg01no544_l09.b1 MSMg01no544_l09.b1 CHROMAT_FILE:
MSMg01no544_l09.b1 PHD_FILE: MSMg01no544_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:28 2005
         (589 letters)



>mm_chr1_50098733_50099721
          Length = 989

 Score = 1094 bits (566), Expect = 0.0
 Identities = 579/584 (99%), Gaps = 2/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctgtcaaatttaagaaggaaaactgaacacataaccctcaaagaagttgtggcata 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aattctgtcaaatagaagaaggaaaactgaacacataaccctcaaagaagttgtggcata 642

                                                                       
Query: 66  tgtgctatttctgttgagcaaacatattctctcatatgttaatataaaggttatgctctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgtgctatttctgttgagcaaacatattctctcatatgttaatataaaggttatgctctt 582

                                                                       
Query: 126 taatatttgatattggcatggctcattagatgttcttttagttatgatctgtcatatgat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 taatatttgatattggcatggctcattagatgttcttttagttatgatctgtcatatgat 522

                                                                       
Query: 186 taaattctacattatgagaaatgggaaggcatgagaaagttggctgtgaggtttttatat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 taaattctacattatgagaaatgggaaggcatgagaaagttggctgtgaggtttttatat 462

                                                                       
Query: 246 tagatgacaatttcacaaggctctttcttgttcctgtggagtcacatataaatatgggca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tagatgacaatttcacaaggctctttcttgttcctgtggagtcacatataaatatgggca 402

                                                                       
Query: 306 gagccaagatacattacaaagaacttacatccagttttgagcaatctttgtgttttgctg 365
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gagccaagatacattgcaaagaacttacatccagttttgagcaatctttgtgttttgctg 342

                                                                       
Query: 366 accttgggatgcacttgccagttgtcatagtatatgcctaaccccccagagagagaagct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 accttgggatgcacttgccagttgtcatagtatatgcctaaccccccagagagagaagct 282

                                                                       
Query: 426 tttttctttcttatatttgttactatattttgagatttctttcttatttaaggttgagtt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tttttctttcttatatttgttactatattttgagatttctttcttatttaaggttgagtt 222

                                                                       
Query: 486 ataccataagttttatacacacacaaacacacacacacacacacacacacacacacacac 545
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 221 ataccataagttttatacacacac--acacacacacacacacacacacacacacacacac 164

                                                       
Query: 546 acacattaatagcttcttttctttggagttcatatatatagaac 589
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 acacattaatagcttcttttctttggagttcatatatatagaac 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)