NNNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTGTTTATATCTGTACCTTATTTTTAATTGATTAT
TAGTTTGCTGATGTCTAGTTTTTTGACTTCTTTATATATTTTGGGTATTA
GCACTCTGACAAATGTGGAATTGGTAAAAATCTTCTTTCATTCTGTGGGC
TGCTGATTTGTTTGACTCTGTCCTTTGCCTTACAGTTTCATGAGGTCCGA
TTTATTAATTGTTGATCTTAGTACCCGTGCTATTGGTGTTCTGTTCAGGA
AGTTGTCTCCTGTGTCAGTGCATTCAAGGCTATTGCCTACTTTCTTTTCT
ATCAGGTTGAGTGTGTCTGGTTTTGTGCTGAGGTCTCTGACATACTTGGA
CTTGAATTTTGTGCAGGGTGATAGATATTAATCCATTTTCATTCTTCTAC
ATGTCAACATCCAGTTAGACCATCACCCCATTTGCAGATGATGCTTTCGT
TTTTCCATTGTATATTTATGGCTTCTTTATAAAAGAATCAGGTGTCCAAA
GGTGTGTTGATTTATGTCTGGGTCTTTGACTTGATTCCATTGATTAACCT
GTCCTTTTTTTCAGTGCCAATACCATGCCAGGTGTAGAGTCTTATTTTCA
AGGGAGCAGATTTAGGTGGATTGATAATCTAGAGTCATAAAATTTCCAGG
ACATTCAAAATAATGGTCTAAGAGATATTT

AAAAAAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTCCATGGTCATTGATC
TTTTTGAAGCCATCAGAATACTACTGATCTTTCATGAGTATGGAAGATTC
ATGGTTCTTCTATACCTAGGTGACTCAAATAATAGAAGCCTTTTCTTCAG
GTTGACCAGTTTTCCTGTTTTATTCACAGTGAATCTCTTAATATAGCTTC
TGAAGGCTCAAAAGAATGTCCTACCTCAAATATACCTGTGTCTGTTCACC
TTTCTTCAGGATGCCTTTCCCCAAACGTTCTCTTCAGCTCTCCCACTGTC
TCCCACCCTTACTCTGATTTGATGCTATCTAAGTGAGATTGGTACCCATA
CCCTCCACTCTCCCCAACCTATCATTGTTTTATTTTACAGTTTAATTTAC
ACAATAATTTATTTATTGTATGTGCCTTATTCTGGCATGCATATAAACAT
GAGTCTTTAGACATTTTTGTCCATTTCAGGTCTTTATTTTGCACTCTTAG
AAGGGTGCCTGCCACATACCTGTGGTATATTTTTTATCTCATGTTATTTC
ACAAATACTTATAAAGAAAAGAATGTATGGCATGAAATTCTGGGAAGAAG
ATTCCACTTTATAGAAAATATATTTTCTTTAATGGTACACATAACTTTTT
ACAGTATACTTGTAGACTGTGTATTCTTATACAATA

Query= MSMg01no544_m19.g1 MSMg01no544_m19.g1 CHROMAT_FILE:
MSMg01no544_m19.g1 PHD_FILE: MSMg01no544_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:35 2005
         (567 letters)



>mm_chr1_139360649_139361615
          Length = 967

 Score = 1065 bits (551), Expect = 0.0
 Identities = 563/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttccatggtcattgatctttttgaagccatcagaatactactgatctttcatgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctgttccatggtcattgatctttttgaagccatcagaatactactgatctttcatgagta 708

                                                                       
Query: 61  tggaagattcatggttcttctatacctaggtgactcaaataatagaagccttttcttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tggaagattcatggttcttctatacctaggtgactcaaataatagaagccttttcttcag 648

                                                                       
Query: 121 gttgaccagttttcctgttttattcacagtgaatctcttaatatagcttctgaaggctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gttgaccagttttcctgttttattcacagtgaatctcttaatatagcttctgaaggctca 588

                                                                       
Query: 181 aaagaatgtcctacctcaaatatacctgtgtctgttcacctttcttcaggatgcctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 587 aaagaatgtcctacctcaaatatacctgtgtctgttcacctttcttcaggatgcccttcc 528

                                                                       
Query: 241 ccaaacgttctcttcagctctcccactgtctcccacccttactctgatttgatgctatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ccaaacgttctcttcagctctcccactgtctcccacccttactctgatttgatgctatct 468

                                                                       
Query: 301 aagtgagattggtacccataccctccactctccccaacctatcattgttttattttacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagtgagattggtacccataccctccactctccccaacctatcattgttttattttacag 408

                                                                       
Query: 361 tttaatttacacaataatttatttattgtatgtgccttattctggcatgcatataaacat 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tttaatttacacaatgatttatttattgtatgtgccttattctggcatgcatataaacat 348

                                                                       
Query: 421 gagtctttagacatttttgtccatttcaggtctttattttgcactcttagaagggtgcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 347 gagtctttagacatttttgtccatttcaggtctttattttgcactcttagaagagtgcct 288

                                                                       
Query: 481 gccacatacctgtggtatattttttatctcatgttatttcacaaatacttataaagaaaa 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gccacatacctgtggtgtattttttatctcatgttatttcacaaatacttataaagaaaa 228

                                      
Query: 541 gaatgtatggcatgaaattctgggaag 567
           |||||||||||||||||||||||||||
Sbjct: 227 gaatgtatggcatgaaattctgggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)