Query= MSMg01no544_n17.b1 MSMg01no544_n17.b1 CHROMAT_FILE:
MSMg01no544_n17.b1 PHD_FILE: MSMg01no544_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:40 2005
(690 letters)
>mm_chr1_3322337_3323426
Length = 1090
Score = 1297 bits (671), Expect = 0.0
Identities = 683/687 (99%)
Strand = Plus / Plus
Query: 4 ggaattcccaaacagcccaggctattgccaagattataggtatctctccacaaaccgatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccaaacagcccaggctattgccaagattataggtatctctccacaaaccgatg 263
Query: 64 gcaagcctcattgctgaagacaacatctacacaactaatttaacatggcactctacaagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaagcctcattgctgaagacaacatctacacaactaatttaacatggcactctacaagc 323
Query: 124 taccaatgaagaaacataaacaccaatacagcttcaaattatttgacatgaaatggtgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taccaatgaagaaacataaacaccaatacagcttcaaattatttgacatgaaatggtgtc 383
Query: 184 ctgcctgatagatatgcttgttcaatggtagcacaaagcttacaggagtaaccagccaat 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgcctgacagatatgcttgttcaatggtagcacaaagcttacaggagtaaccagccaat 443
Query: 244 atcctatttgactataggcccactcacaagatagagtccatacccaatactgcttgggta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcctatttgactataggcccactcacaagatagagtccatacccaatactgcttgggta 503
Query: 304 accaagaatctgagaatacatagcccagagaccaagggtaaaaccaaagactactgtttt 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accaagaatctgaaaatacatagcccagagaccaagggtaaaaccaaagactactgtttt 563
Query: 364 actaaaggagcatagcaataaaatgactaatgacattctgctaataggtcagtgtcttgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actaaaggagcatagcaataaaatgactaatgacattctgctaataggtcagtgtcttgc 623
Query: 424 tcagccatcatcagagaagtttccacatgtagcagatgggagcaaatacagacacccaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagccatcatcagagaagtttccacatgtagcagatgggagcaaatacagacacccaca 683
Query: 484 gctttaaatgattacactttcccaaattaaagcaaaaagtttatattaaaagaaaaatac 543
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 gctttaaatgattacactttcccaaattaaaggaaaaagtttatattaaaagaaaaatac 743
Query: 544 aacttccattttgccaagttctgtgggtcaagtgaattgatctttagctgtagtcactac 603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 aacttccattttgccaagttctgtgggtcaagggaattgatctttagctgtagtcactac 803
Query: 604 tatcaataaacactgacatttaaatgcattttgaattttgatgttgaataagttttaact 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatcaataaacactgacatttaaatgcattttgaattttgatgttgaataagttttaact 863
Query: 664 gaagtgaatttgcagtctatcttagag 690
|||||||||||||||||||||||||||
Sbjct: 864 gaagtgaatttgcagtctatcttagag 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_n17.g1 MSMg01no544_n17.g1 CHROMAT_FILE:
MSMg01no544_n17.g1 PHD_FILE: MSMg01no544_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:40 2005
(635 letters)
>mm_chr1_3466925_3467959
Length = 1035
Score = 1212 bits (627), Expect = 0.0
Identities = 633/635 (99%)
Strand = Plus / Minus
Query: 1 caagaactatgtttcagagtaaattttaattagctgtggaatggctgactttcctctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 caagaactatgtttcagagtaaattttaattagctgtggaatggctgactttcctctatt 776
Query: 61 aattaatcatgtatagagatatgtaagctattagacataaccacatctgataaacactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aattaatcatgtatagagatatgtaagctattagacataaccacatctgataaacactca 716
Query: 121 ctgccctctttgacagttagttgaattttcaattaaaatgcctagaattcctctgcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctgccctctttgacagttagttgaattttcaattaaaatgcctagaattcctctgcctgt 656
Query: 181 tccaaatggtgtgaagtggtgataaaattccactccttgaagaatacagtacagtgagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tccaaatggtgtgaagtggtgataaaattccactccttgaagaatacagtacagtgagct 596
Query: 241 tcctcataaacagaggtatgtgagtttccttttcccaggatcaatgtgattagcacagga 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcctcatacacagaggtatgtgagtttccttttcccaggatcaatgtgattagcacagga 536
Query: 301 tcaaagtaatgtattattagctatacaagggtgtattatggggtgaaatgggtggacata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcaaagtaatgtattattagctatacaagggtgtattatggggtgaaatgggtggacata 476
Query: 361 tgtgtgcgtgtgtagttgtgtatatctatgtattgccatgactacaataaagagtaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgtgtgcgtgtgtagttgtgtatatctatgtattgccatgactacaataaagagtaacat 416
Query: 421 caccagattccagtcagtaacatcatgtagtgaagctaaaagcacaggcatatgggagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caccagattccagtcagtaacatcatgtagtgaagctaaaagcacaggcatatgggagcc 356
Query: 481 atccagttctgaattgttgccttaatgtgaaaattacatgatggccatgtgatacatgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atccagttctgaattgttgccttaatgtgaaaattacatgatggccatgtgatacatgtt 296
Query: 541 ttgacctcagcacagaagctgaagtgtgaggattgggagctggaggacatccttgcctag 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgacctcagcacagaagctgacgtgtgaggattgggagctggaggacatccttgcctag 236
Query: 601 atagtttaagtatagcctaggttataaagtgaatt 635
|||||||||||||||||||||||||||||||||||
Sbjct: 235 atagtttaagtatagcctaggttataaagtgaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
