Query= MSMg01no545_f02.b1 MSMg01no545_f02.b1 CHROMAT_FILE:
MSMg01no545_f02.b1 PHD_FILE: MSMg01no545_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:15 2005
(688 letters)
>mm_chr1_49832804_49833891
Length = 1088
Score = 1282 bits (663), Expect = 0.0
Identities = 681/691 (98%), Gaps = 7/691 (1%)
Strand = Plus / Plus
Query: 5 gaattccagagaccatctccctgacctccattcattcatcccttgttgctatgtttcagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagaccatctccctgacctccattcattcatcccttgttgctatgtttcagc 264
Query: 65 acacatctcagacagatattctctgttcaaaaaagtctgccagtgaaccttgtcactgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 acacatctcagacagatattctctgttcaaaaaagtctgccagtgaaccttctcactgtt 324
Query: 125 ccctgagaaccagtccgcaaggttatccatagtactgcaacagagcaacacacagcaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgagaaccagtccgcaaggttatccatagtactgcaacagagcaacacacagcaaaa 384
Query: 185 tcagtccctaaaattccacagaggaaacagaaaccaaagaacaaaatagccacccaacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagtccctaaaattccacagaggaaacagaaaccaaagaacaaaatagccacccaacaa 444
Query: 245 agacaaacccaggaatcagcacctattcacctagatgtataatttctgcaaacacagatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacaaacccaggaatcagcacctattcacctagatgtataatttctgcaaacacagatg 504
Query: 305 cctagatgccagcttaagaactcaataacaaccagaacaattatgtctcatctagaaccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctagatgccagcttaagaactcaataacaaccagaacaattatgtctcatctagaaccc 564
Query: 365 agctatactaccactataggtccttaaagagcaagttttggaaaaatatattccaactaa 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agctatcctaccactataggtccttaaagagcaagttttggaaaaatatattccaactaa 624
Query: 425 acggactgaagaaacaagctggtgtagccattgtaatatcaaacaaaatagacttcaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acggactgaagaaacaagctggtgtagccattgtaatatcaaacaaaatagacttcaaaa 684
Query: 485 caaaattaatcaaaaaaaaaaaaagaggagaacactgcataatcatcaaaaaaaaaaa-- 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaaattaatcaaaaaaaaaaaaagaggagaacactgcataatcatcaaaaaaaaaaaaa 744
Query: 543 -----cgcagcaaataatgaatatgacatttaagttcttaacacctatgtaccaaggtca 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaaacgcagcaaataatgaatatgacatttaagttcttaacacctatgtaccaaggtca 804
Query: 598 ctcacttatgtaaagaaacactactacagcttaaatcatatactgaacttcactgactga 657
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 805 ctcacttatgtaaagaaacactactacagcttaaatcatatactgatcttcactgactga 864
Query: 658 tggggagaactttaataaccatctaatacca 688
|||||||||||||||||||||||||||||||
Sbjct: 865 tggggagaactttaataaccatctaatacca 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_f02.g1 MSMg01no545_f02.g1 CHROMAT_FILE:
MSMg01no545_f02.g1 PHD_FILE: MSMg01no545_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:15 2005
(660 letters)
>mm_chr1_49978582_49979642
Length = 1061
Score = 1007 bits (521), Expect = 0.0
Identities = 638/705 (90%), Gaps = 52/705 (7%)
Strand = Plus / Minus
Query: 1 atactcccaaattttcagaagatattgggtttattattacacatagaaattaatttagat 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 844 atactcccaaattttcagaagatattgggtttattattatacatagaaattaatttagat 785
Query: 61 tttattaaacattaaaatatgatcataataaaattacatgaggataacgtattttaaaag 120
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 784 tgtattaaacattaaaatatgatcataataaaattacatgaggataacatattttaaaag 725
Query: 121 aaacttactaaaagctaggaatttttcttaagttagagttttgctatattttaaaaccta 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 724 aaacttactaaaagctaggaatttttcttaaggtagagttttgctatattttaaaaccta 665
Query: 181 gcatccacatgtagacagtacaatgctatataaacaaacaaacaaaca----aataaata 236
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 664 gcatccacatgtagacagtacaatgctatataaacaaacaaacaaacagacaaatatata 605
Query: 237 -a-------------------atatatagagagagacagaga-a---------------- 259
| ||||||||||||||| ||||| |
Sbjct: 604 tatatatatatatatatatatatatatagagagagagagagagagagagagagagagaga 545
Query: 260 -aaataattacaaaactaaaaaaa-tagcaataaatttgaaaaacacacatagtaagaaa 317
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 544 gaaataattacaaaactaaaaaaaatagcaataaatttgaaaaacacacataataagaag 485
Query: 318 atgaaatataccagtaaattcgaaagtcaaacattgaatacaaattataaataaaagtaa 377
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atgaaatataccagtaaattctaaagtcaaacattgaatacaaattataaataaaagtaa 425
Query: 378 tttttaaatgaataaagtgatttgtaagagaatataacatcatagttatggttattttaa 437
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 424 tttttaaatgaataaaatgatttgtaagagaatatagcgtcatagttatggttattttaa 365
Query: 438 agttaatagttacactattatgattctagaatgattctag--attttatgtagaaaatga 495
||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||
Sbjct: 364 agttaatagttacactattgtgattctagaatgaat---gccattttatgtagaaaatga 308
Query: 496 aaaattttacataaatggcatatggagaaatgataattcaatcatttttaataatagtac 555
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 307 aaaattttacataaatggcatatggagaaatgataattcaatcattcttaataatagtac 248
Query: 556 atgaaggacagtaataagtgttcttgctgggttacataataattaacgtgataagattgg 615
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 247 atga-ggacagtaataagtgttcttgctgggttacataataattaac---ataagattgg 192
Query: 616 aaacaaatgtcctgaactcaatcactttgtctcataatttagcat 660
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaacaaatgtcctgaactcaatcactttgtctcataatttagcat 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
