Query= MSMg01no545_i02.b1 MSMg01no545_i02.b1 CHROMAT_FILE:
MSMg01no545_i02.b1 PHD_FILE: MSMg01no545_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:29 2005
(669 letters)
>mm_chr1_122316264_122317332
Length = 1069
Score = 1257 bits (650), Expect = 0.0
Identities = 662/666 (99%), Gaps = 1/666 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagagggaacctaacgggaattattcaaggccacggacctcaggctggagcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagagggaacctaacgggaattattcaaggccacggacctcaggctggagcaa 264
Query: 65 agcatgtgtctaattggcaatgaagcattgaaaattggaattagcactcttactaaaaag 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcgtgtgtctaattggcaatgaagcattgaaaattggaattagcactcttactaaaaag 324
Query: 125 tcttagttactactgtactgtgataaaacatcacaatccaagcaacttgcaggagagttt 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttagttactattgtactgtgataaaacatcacaatccaagcaacttgcaggagagttt 384
Query: 185 gttttgggcttagtttcagagggttaatgtccatgatgattgtagcatggaacatgcaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttttgggcttagtttcagagggttaatgtccatgatgattgtagcatggaacatgcaca 444
Query: 245 gcagcaggcaggctggcacagtactggaacagtagctgggaactcacgtcttgatctata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagcaggcaggctggcacagtactggaacagtagctgggaactcacgtcttgatctata 504
Query: 305 ggcatgaggcagagagagctaactgagaatggcctgagctcttggaacctcaaagctcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcatgaggcagagagagctaactgagaatggcctgagctcttggaacctcaaagctcac 564
Query: 365 cccaagcaaccaacttctccaacaaggctgcccctcctaatccttccccaa-ggtttcac 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 cccaagcaaccaacttctccaacaaggctgcccctcctaatccttccccaaaggtttcac 624
Query: 424 caactggggaccaagtattcaagtacacaagcccatgtgggcaattctcctgaaaaccac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caactggggaccaagtattcaagtacacaagcccatgtgggcaattctcctgaaaaccac 684
Query: 484 cacacctttccccagggtacaggaacagctagtgaaaattgaaggatcccaggtcagaga 543
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 cacacctttccccagggtacaggaacagctagtgcaaattgaaggatcccaggtcagaga 744
Query: 544 acgcttggtactagaggtactaggttgaaagtccatcatggcagaggatgcatggcggct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acgcttggtactagaggtactaggttgaaagtccatcatggcagaggatgcatggcggct 804
Query: 604 gaaacataagccatctggtctctgcagccaggacacagagagcttctgtgtggctgcttc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaacataagccatctggtctctgcagccaggacacagagagcttctgtgtggctgcttc 864
Query: 664 ctcttc 669
||||||
Sbjct: 865 ctcttc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_i02.g1 MSMg01no545_i02.g1 CHROMAT_FILE:
MSMg01no545_i02.g1 PHD_FILE: MSMg01no545_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:29 2005
(552 letters)
>mm_chr1_122496633_122497584
Length = 952
Score = 1052 bits (544), Expect = 0.0
Identities = 550/552 (99%)
Strand = Plus / Minus
Query: 1 ccttttgcttggctgcctctcaggctcagccgagaatctcccgacttctctgggccgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ccttttgcttggctgcctctcaggctcagccgagaatctcccgacttctctgggccgggt 693
Query: 61 ttccaaaaaggactgggctggggcttggtggcaagaacctctccagagttgagtctctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttccaaaaaggactgggctggggcttggtggcaagaacctctccagagttgagtctctgg 633
Query: 121 ggccaccgcggtctctccaactttctgaggcttctccacatccactgtgctttcttgtag 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 632 ggccaccgcggtctctccaactttctgaggcttctccacatctactgtgctttcttgtgg 573
Query: 181 gttaccttctgcttctaacccaagggctccccgaaatctccagttgccctcactccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gttaccttctgcttctaacccaagggctccccgaaatctccagttgccctcactccttcc 513
Query: 241 ccccgaaataggggtgggatttttatttatatttaagttcgcaaaattgaaatctttatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ccccgaaataggggtgggatttttatttatatttaagttcgcaaaattgaaatctttatc 453
Query: 301 ccacaagcgaccgtgggtacttaattaaattctaattaggacactatcaatatcctattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccacaagcgaccgtgggtacttaattaaattctaattaggacactatcaatatcctattt 393
Query: 361 agccgcgtagcttttgtgcgccgcggtccctttcagcgccgtaaatagggtctcgacgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agccgcgtagcttttgtgcgccgcggtccctttcagcgccgtaaatagggtctcgacgcc 333
Query: 421 ttatctcgcctgcaggagacgccgtgagaagggctgcggaagataatttataggttttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttatctcgcctgcaggagacgccgtgagaagggctgcggaagataatttataggttttaa 273
Query: 481 ttactcttcattccgcctgatcagcttggcgttcatcacaggcctgtgaataaaaccctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttactcttcattccgcctgatcagcttggcgttcatcacaggcctgtgaataaaaccctg 213
Query: 541 gtcaaaagctct 552
||||||||||||
Sbjct: 212 gtcaaaagctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
