BAC Information

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BAC

Clone NameMSMg01-545I09
Chromosome1 (Build37)
Map Location 21,867,481 - 21,868,136
singlet/doubletsinglet
Overlap geneKcnq5
Upstream genePaqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545I09.T7 (MSMg01no545_i09.b1)MSMg01-545I09.TJ (MSMg01no545_i09.g1)
ACCAG610565AG610566
length718730
length of high quality
(start - end)
657 (60 - 716)375 (68 - 442)
definitionCHROMAT_FILE: MSMg01no545_i09.b1 PHD_FILE: MSMg01no545_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:31 2005CHROMAT_FILE: MSMg01no545_i09.g1 PHD_FILE: MSMg01no545_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTTA
CAATTCAAAATGGTAGTGATTTCACTCCAAAGGGACATGTTAAATATTTA
TCTTTTATCTGTACGAATGTTTGTTTCCATTTACGTATGTTCATGATATC
TGTCACAGTGAAGGGCATCACACTGAAACTGAAGGTTTACCCCGTTGTGA
GTTCCCATGTGGATGTTCACAAAAAAAGAACCCAGGTCTTCTTCAAGAGT
AGGAAGTACTCTTAACTGTTGGACTAGCTACCTCTCCACTATCCCAGAAA
GGATATCTTAAATGAAGTTGTGAGGAAAGAATATTGATTGTCTAAATATA
ATCACATACTATTATATACATATTATTATATCACATATTAATCACCATCC
TCTGCTACATATGCAACTAGAGACACAACTCTTGGGGAGCGGGGTACTGG
TTAGTTCATATTGTTGATCCTCCTATAGAATTGCAGACCCCTTTAGCACT
TTGGATACTTTCTCGAGCTCCTTCATTAGGGGCCCTGTGTTCTAACCAAT
AAATGACTGTGAGCATCCACTTCTGTATTTGCCAGACACTGGCATAGCCT
CACAAGAGATAGCTATATCAGGGTCCTGACAGCAAAATCTTGCTGGCATA
TGCAATAGTGTCTGGGTTTGGTGGTTATATATGGGATGGATCTCCAGGTG
GGACAATCACTGGATGGN
TTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATGAAAATGAATGCAAAACATACTCCAAATTA
TGAGACACAATGAATGTCACCTGTCCCTCTAGAGGAACTAAGACAGGTGG
TCATAGCACTAGAAGCCTGCATTAAAAAATAAAATTGGAGAGATCTCATA
TTAGCAACTTTTTAAAAAATATTTTTTATTACATATTTTCCTCAATTACA
TTTCCAATGCTATCCCAAAAGTCACCCATACCCTCCCCCACCACTCCCCT
ACCCACCCATTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCAT
ATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG
GCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG
TTAGTTCATAATGTTGTTGCACCTCTTGCAGGTCTCTTTAGCTCCTTGGC
TACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCAATAGCTG
ACTGTGAGCATCCACTAGAGACTGCCTTATCCAGGGATCCATCCCATAAT
TATGTTCCAAATGATGACACCATTGCATACACTAGCAAGCGTTTGCTGAA
AGGACCCTGATATAGCTGTCTCTTGCGAGACTAGGCCGGGGCCTTATTAT
ACACTTATGTGGATGCTCATAGTTATCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_i09.b1 MSMg01no545_i09.b1 CHROMAT_FILE:
MSMg01no545_i09.b1 PHD_FILE: MSMg01no545_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:31 2005
         (657 letters)



>mm_chr1_21867280_21868336
          Length = 1057

 Score = 1170 bits (605), Expect = 0.0
 Identities = 644/657 (98%), Gaps = 1/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtagtgatttcactccaaagggacatgttaaatatttatcttttatctgtacgaatg 60
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 202 atggtagtgatttcactccaaagggacatgttaaatact-atcttttatctgtacgaatg 260

                                                                       
Query: 61  tttgtttccatttacgtatgttcatgatatctgtcacagtgaagggcatcacactgaaac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tttgtttccatttacgtatgtgcatgatatctgtcacagtgaagggcgtcacactgaaac 320

                                                                       
Query: 121 tgaaggtttaccccgttgtgagttcccatgtggatgttcacaaaaaaagaacccaggtct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaggtttaccccattgtgagttcccatgtggatgttcacaaaaaaagaacccaggtct 380

                                                                       
Query: 181 tcttcaagagtaggaagtactcttaactgttggactagctacctctccactatcccagaa 240
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tcttcaagagtaggaagttctcttaactgctggactagctacctctccactatcccagaa 440

                                                                       
Query: 241 aggatatcttaaatgaagttgtgaggaaagaatattgattgtctaaatataatcacatac 300
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 agggtatcttaaatgaagttgtgaggaaagaacattgattgtctaaatataatcacatac 500

                                                                       
Query: 301 tattatatacatattattatatcacatattaatcaccatcctctgctacatatgcaacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattatatacatattattatatcacatattaatcaccatcctctgctacatatgcaacta 560

                                                                       
Query: 361 gagacacaactcttggggagcggggtactggttagttcatattgttgatcctcctataga 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagacacaactctgggggagcggggtactggttagttcatattgttgatcctcctataga 620

                                                                       
Query: 421 attgcagacccctttagcactttggatactttctcgagctccttcattaggggccctgtg 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgcagacccctttagtactttggatactttctcgagctccttcattaggggccctgtg 680

                                                                       
Query: 481 ttctaaccaataaatgactgtgagcatccacttctgtatttgccagacactggcatagcc 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccaaccaataaatgactgtgagcatccacttctgtatttgccagacactggcatagcc 740

                                                                       
Query: 541 tcacaagagatagctatatcagggtcctgacagcaaaatcttgctggcatatgcaatagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcacaagagatagctatatcagggtcctgacagcaaaatcttgctggcatatgcaatagt 800

                                                                    
Query: 601 gtctgggtttggtggttatatatgggatggatctccaggtgggacaatcactggatg 657
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 gtctgggtttggtggttatatatgggatggatctccaggtgggacaatctctggatg 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)