BAC Information

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BAC

Clone NameMSMg01-545L13
Chromosome1 (Build37)
Map Location 157,204,657 - 157,361,238
singlet/doubletdoublet
Overlap geneXpr1, EG433367
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090
Downstream geneAcbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545L13.T7 (MSMg01no545_l13.b1)MSMg01-545L13.TJ (MSMg01no545_l13.g1)
ACCAG610715AG610716
length732752
length of high quality
(start - end)		638 (39 - 676)333 (68 - 400)
definitionCHROMAT_FILE: MSMg01no545_l13.b1 PHD_FILE: MSMg01no545_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:46 2005CHROMAT_FILE: MSMg01no545_l13.g1 PHD_FILE: MSMg01no545_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,204,657 - 157,205,274)(157,360,906 - 157,361,238)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GTTTTCACAATGCTTCAGTAATCAGATGCTATCATTAGATCTAGCTATAA
AATATCAAATGTAGTGATCAAATCAGTCATCCACTACATATTAAGGTTTT
GGTCAGTGATGGGCCACATATACCACAGTAGATCTTTAAGATTATAATGA
AGCTGAAAAACTATTGTCCAAGGACAATGAAGTCAACATAACACCCAGGA
ACATCATATCATTTATGTTGGTGGTAGTGTTCTGTAAACAAACTGCCTGT
ATTACATGTGAAGCTACAGAACATAATTGTGTACAATATATAGTCACTGA
TGATAACATGTTACTGGTTTATGTATTTATTGCATATACTTTTTACCATT
TTTTAGTGCACTCCTACTAGTAAAAGTTTACTGTAAAACTTTACCCCAGT
GTTGTTTATATCTCTGTGAGTACACACTAAACGCATGTGTACACATGTAT
CACAGAATAATCTCAGGTATTGGTCCTTGCCTTTGTCTTCTACCTGTTTT
GAGACAGGATCTCCTATTGTTCCACCCCTTCTGTCCCTGACTGCCATCTC
ACCTGCCACAGGAACACTGGAATGAATTATAGGAACACTGACTGCATCCA
CTCCACATGAGTTCTGGGGAAACAAACTCAAGTCCCAGACTTGTATGGCA
GTACTTTACTCACTGAATCATCAGGTTTTCCA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAGGAGGATTAAAAACCTCGAGCATGAAAGGA
CTTTGCAAATTGCCTTTTTTTCCCCTATAAAGTGAACATAATAGCTATTG
TCTTAAGAACACTGTGTTGTAGCATGAAAAGAGGTTTCCATCGCTCCACA
TACGCTTATTCAGGTTCTATTTGTCCAGTTATTCAGAATAGGGTTTCTGC
TCAGAGACTTTACAACCAGGGACACCAAAATAACTCCCAGGAAGCTAATG
TGGATAGTTAAAAAGAGCTAAGCTGACTCTGTAGTAGAAAGATGAAGGCT
CGATTTAAGAAGAAAAGATAGCCGGGCAGCCTGGTCTACAGAGTGAGTTC
NNNNANNNNCNNNNNTNNNNNNATNNNNNNNNNNNNNNNTNCNNNNNNNT
TTTTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTNTTTTTT
TTTTTTTCTTTTTTTTTCCCCCTTCTCCCTTCCCCTTCTTTTTTCTCCCT
TTTTTTCTTTCTCCCTTTCCTTTTTTCTCTCCTCCTTTTTTTTTTCTTTT
TTTTTTCTNTTCTTTTTTTCTTCCTCTCTCCCCTTCTCTCCTTTCTTTCT
TTTTCTTTCTTTTCTGCCTTCCCTTCAGTGCTTTTTCTCTCCGATTTTTC
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_l13.b1 MSMg01no545_l13.b1 CHROMAT_FILE:
MSMg01no545_l13.b1 PHD_FILE: MSMg01no545_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:46 2005
         (638 letters)



>mm_chr1_157204437_157205474
          Length = 1038

 Score = 1195 bits (618), Expect = 0.0
 Identities = 618/618 (100%)
 Strand = Plus / Plus

                                                                       
Query: 21  aatgcttcagtaatcagatgctatcattagatctagctataaaatatcaaatgtagtgat 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aatgcttcagtaatcagatgctatcattagatctagctataaaatatcaaatgtagtgat 280

                                                                       
Query: 81  caaatcagtcatccactacatattaaggttttggtcagtgatgggccacatataccacag 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caaatcagtcatccactacatattaaggttttggtcagtgatgggccacatataccacag 340

                                                                       
Query: 141 tagatctttaagattataatgaagctgaaaaactattgtccaaggacaatgaagtcaaca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tagatctttaagattataatgaagctgaaaaactattgtccaaggacaatgaagtcaaca 400

                                                                       
Query: 201 taacacccaggaacatcatatcatttatgttggtggtagtgttctgtaaacaaactgcct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taacacccaggaacatcatatcatttatgttggtggtagtgttctgtaaacaaactgcct 460

                                                                       
Query: 261 gtattacatgtgaagctacagaacataattgtgtacaatatatagtcactgatgataaca 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtattacatgtgaagctacagaacataattgtgtacaatatatagtcactgatgataaca 520

                                                                       
Query: 321 tgttactggtttatgtatttattgcatatactttttaccattttttagtgcactcctact 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgttactggtttatgtatttattgcatatactttttaccattttttagtgcactcctact 580

                                                                       
Query: 381 agtaaaagtttactgtaaaactttaccccagtgttgtttatatctctgtgagtacacact 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agtaaaagtttactgtaaaactttaccccagtgttgtttatatctctgtgagtacacact 640

                                                                       
Query: 441 aaacgcatgtgtacacatgtatcacagaataatctcaggtattggtccttgcctttgtct 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaacgcatgtgtacacatgtatcacagaataatctcaggtattggtccttgcctttgtct 700

                                                                       
Query: 501 tctacctgttttgagacaggatctcctattgttccaccccttctgtccctgactgccatc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tctacctgttttgagacaggatctcctattgttccaccccttctgtccctgactgccatc 760

                                                                       
Query: 561 tcacctgccacaggaacactggaatgaattataggaacactgactgcatccactccacat 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tcacctgccacaggaacactggaatgaattataggaacactgactgcatccactccacat 820

                             
Query: 621 gagttctggggaaacaaa 638
           ||||||||||||||||||
Sbjct: 821 gagttctggggaaacaaa 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_l13.g1 MSMg01no545_l13.g1 CHROMAT_FILE:
MSMg01no545_l13.g1 PHD_FILE: MSMg01no545_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:46 2005
         (333 letters)



>mm_chr1_157360706_157361438
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggaggattaaaaacctcgagcatgaaaggactttgcaaattgcctttttttccccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttaggaggattaaaaacctcgagcatgaaaggactttgcaaattgcctttttttccccta 474

                                                                       
Query: 61  taaagtgaacataatagctattgtcttaagaacactgtgttgtagcatgaaaagaggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taaagtgaacataatagctattgtcttaagaacactgtgttgtagcatgaaaagaggttt 414

                                                                       
Query: 121 ccatcgctccacatacgcttattcaggttctatttgtccagttattcagaatagggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccatcgctccacatacgcttattcaggttctatttgtccagttattcagaatagggtttc 354

                                                                       
Query: 181 tgctcagagactttacaaccagggacaccaaaataactcccaggaagctaatgtggatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgctcagagactttacaaccagggacaccaaaataactcccaggaagctaatgtggatag 294

                                                                       
Query: 241 ttaaaaagagctaagctgactctgtagtagaaagatgaaggctcgatttaagaagaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttaaaaagagctaagctgactctgtagtagaaagatgaaggctcgatttaagaagaaaag 234

                                            
Query: 301 atagccgggcagcctggtctacagagtgagttc 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 atagccgggcagcctggtctacagagtgagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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