BAC Information

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BAC

Clone NameMSMg01-545M23
Chromosome1 (Build37)
Map Location 35,163,275 - 35,164,004
singlet/doubletsinglet
Overlap genenone
Upstream geneDst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545M23.T7 (MSMg01no545_m23.b1)MSMg01-545M23.TJ (MSMg01no545_m23.g1)
ACCAG610783AG610784
length742744
length of high quality
(start - end)
648 (58 - 705)573 (65 - 637)
definitionCHROMAT_FILE: MSMg01no545_m23.b1 PHD_FILE: MSMg01no545_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:53 2005CHROMAT_FILE: MSMg01no545_m23.g1 PHD_FILE: MSMg01no545_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGG
ATTCCAGATCTGCACTCTGAAATGATCAAAAGAATCTAAATTCTTTGGCT
TATGAAAAAAATGAAAGAGGGCATAAATTACTAATATCAAAATGAGAGAA
ACATTTATTATTGATTACACTGATATTGCAGGAATAACAAGGAAAATGTT
GTGAACAGTGGGTAGGGACAGAGGAAAGAGAGAGAAAGTGAGTGGACAAA
AGGAGAGAGAGCCTGTGGTATAAGAAAGAGCTCTGTAGCTTCTTGACTTT
AGTGGATCTTGGTAGCCTGTGTGGACACACACACACACACACACACACAC
ACACACACACACACACACATATATACACACACAAGCACATACACAAATAC
ACACACATACATGCATACACACACAAACACATATACACACATATAGACAT
ACATATACCATATACCCACATACACACACACACACACACACACACACACA
CACACACACCCTCATATATAGATGAGGACAAACTCAAGTACAAGTTAGAT
CTGAATGTGACTGATAGTTTCCAGTGTCTACACACTGTGTGTTACATTGC
ACTATACAGCTATAAAATGTCACCATCAGCATAACTTGGCAAGAGCACGG
GGAGAGGGGGGTTGTCTTGATCTGCTGTTTCTTTTGAAACATGAGATTCT
CTAATTTTTTTCAATTAAAAAAGGAAAAAAAATCATAAAATG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTTTTTACTACTCTTTCACTTCTGCTCTGCTTTTC
TTCTTCCTCCTCCTCTGTGTCCTTTCTCTCTCTTTCTCCCCCATTTTCTC
CTTCTCTCTCTTCCCACCTTCCAATCCACTTTCCCTTTATCTGCCCAATC
ATCAGTTCTCCTTTATTTTACAAATTAAGGTGGGAAGCAGGCTTACAGGA
AATCACCTGAGTGCTGTCTCATTCCTTGTTTGAAACCCCTCACAGGAGAA
CAGAATTAACATCAAATAGAATTAGCCCCAGGGTCATCCACAACAAGTAT
GAGTGCCTGGTAATTGGAATGTATCAGTGAGTGTGTGCCCATGGATGTCT
GTGAGTGTGAATATGTGAGAGAGTACATGCACATGAACATATATGTAATG
GATGTGTGAATATATGGGTATGTGATCATATGTGAGCAAGCAACTGTGTG
TACATGTATGTACAATTTTCTGTGTTATTGTGTTAGTGTGTATACAAGAA
TGCGCATATATATATGAGAGTGTATGCATGAGAGTACATCTAAATATGTG
TGAGGATGTATATGTTCTTATGTGAGTGTGAAAATGTTTGTGTGCATGTG
TATGTAGTTATGCATGTGATTATATATGGTTGTGTATGTGCATGTGTACA
TGTTTGTGGTTGTGCACAAAAAGTTGTCTTTTTGCACTGACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_m23.b1 MSMg01no545_m23.b1 CHROMAT_FILE:
MSMg01no545_m23.b1 PHD_FILE: MSMg01no545_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:53 2005
         (648 letters)



>mm_chr1_35163157_35164204
          Length = 1048

 Score = 1064 bits (550), Expect = 0.0
 Identities = 645/730 (88%), Gaps = 82/730 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgcactctgaaatgatcaaaagaatctaaattctttggcttatgaaaaaaatgaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atctgcactctgaaatgatcaaaagaatctaaattctttggcttatgaaaaaaatgaaag 178

                                                                       
Query: 61  agggcataaattactaatatcaaaatgagagaaacatttattattgattacactgatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agggcataaattactaatatcaaaatgagagaaacatttattattgattacactgatatt 238

                                                                       
Query: 121 gcaggaataacaaggaaaatgttgtgaacagtgggtagggacagaggaaagagagagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcaggaataacaaggaaaatgttgtgaacagtgggtagggacagaggaaagagagagaaa 298

                                                                       
Query: 181 gtgagtggacaaaaggagagagagcctgtggtataagaaagagctctgtagcttcttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtgagtggacaaaaggagagagagcctgtggtataagaaagagctctgtagcttcttgac 358

                                                                       
Query: 241 tttagtggatcttggtagcctgtgtggacacacacacacacacacacac----------- 289
           ||| |||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 359 tttcgtggatcttggtagcctgtgtggacacacacacacacacacacacatatacacaca 418

                                                                       
Query: 290 ----------------------------------acacacac------------------ 297
                                             ||||||||                  
Sbjct: 419 caagcacatacacaaatacacacacatactgcatacacacacaaacacatatagacacac 478

                                                                       
Query: 298 -------------------acacacacacacacatatatacacacacaagcacatacaca 338
                              ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 479 atataccatatacccacatacacacacacacacacatatacacacacaagcacatacaca 538

                                                                       
Query: 339 aatacacacacatacatgcatacacacacaaacacatatacacacatatagacatacata 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aatacacacacatacatgcatacacacacaaacacatatacacacatatagacatacata 598

                                                                       
Query: 399 taccatatacccacatacacacacacacacacacacacacacacacacacacaccctcat 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 taccatatacccacatacacacacacacacacacacacacacacacacacacaccctcat 658

                                                                       
Query: 459 atatagatgaggacaaactcaagtacaagttagatctgaatgtgactgatagtttccagt 518
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atatacatgaggacaaactcaagtacaagttagatctgaatgtgactgatagtttccagt 718

                                                                       
Query: 519 gtctacacactgtgtgttacattgcactatacagctataaaatgtcaccatcagcataac 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtctacacactgtgtgttacattgcactatacagctataaaatgtcaccatcagcataac 778

                                                                       
Query: 579 ttggcaagagcacggggagaggggggttgtcttgatctgctgtttcttttgaaacatgag 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttggcaagagcacggggagaggggggttgtcttgatctgctgtttcttttgaaacatgag 838

                     
Query: 639 attctctaat 648
           ||||||||||
Sbjct: 839 attctctaat 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)