XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATGG
GAAATAATTCTTGTCAAGATAAGGAAAAACAATGTTGTCTCTCATGGATG
AGCATGCACAGTATTTAAACAGGTGTCTGCGTGGCCTCTCACTTCAAATG
TTTAATTTGAATTTAATTAACCTTTACTTCTATTCTCTCTTTTATTTCAA
AGTACAAAGAGTTTCCATTGTTTTTATCCTTTCACAAGTCAATATTTTGT
TAAATGATGTCATTTCATTCTTCTTGAAAATCCTACCAAATTCTATGTGA
TTAGTTTATTAATGACCAATATTTTCAAATTTTGGAAAATTTTTGGGAAG
TATTTTACTGAGTTTACCACACTGTGCATTTGTATGCCTGTGTGTTTGTG
AGCATATGTGTCTAATGAGTGTATACATATGTGTGAATGCATCTTTATAT
GTGCATGTTTGTTTATGTGAATGTCAATGTATTATGTGTATGTGCATGTA
TGTGGGTGTCAATGTATGTGCATATGTGCATAAAGGCCTGAGGTAGCCAT
CTAGTGTTTTCCACTATTTCTCTCTACTTTGTCTTTCAAGACTGAACCTT
GGGCTCACCAGTTAACTGGACAAGGAGTTTCAATAATCCAGATCTCACTA
TCCGTCCCAGTATTTGTGTCACATACTTGTGCAGATACACTTGGCTACAT
GACAAAACTTAAGTGTCTTGTCCTAAATTCCAGCTTTCATTC

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAACCTANGATACCCTAGATATAAGATACAATTTGCTAAACACATGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACATTATGCN

Query= MSMg01no545_p14.b1 MSMg01no545_p14.b1 CHROMAT_FILE:
MSMg01no545_p14.b1 PHD_FILE: MSMg01no545_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:06 2005
         (690 letters)



>mm_chr1_119108766_119109855
          Length = 1090

 Score = 1234 bits (638), Expect = 0.0
 Identities = 674/686 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatgggaaataattcttgtcaagataaggaaaaacaatgttgtctctcatgga 64
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 205 gaattcctatgggaaataattcttgtcaagataaggcaaaacaattttgtctctcatgga 264

                                                                       
Query: 65  tgagcatgcacagtatttaaacaggtgtctgcgtggcctctcacttcaaatgtttaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tgagcatgcacagtatttaaacaggtgtctgcgtggcctctcacttcgaatgtttaattt 324

                                                                       
Query: 125 gaatttaattaacctttacttctattctctcttttatttcaaagtacaaagagtttccat 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatttaattaacctttacttctattctctcttttatttcaaagtacaaagagtttccat 384

                                                                       
Query: 185 tgtttttatcctttcacaagtcaatattttgttaaatgatgtcatttcattcttcttgaa 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 tgtttttatcctttcacaagtcaatattttgttaaattatgtcatttcattcttcttgaa 444

                                                                       
Query: 245 aatcctaccaaattctatgtgattagtttattaatgaccaatattttcaaattttggaaa 304
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 aatcctaccaaattctatctgattagtctattaatgaccaatattttcaaattttggaaa 504

                                                                       
Query: 305 atttttgggaagtattttactgagtttaccacactgtgcatttgtatgcctgtgtgtttg 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 atttttgggaagtattttactgagtttaccacactgtgcatttgaatgcctgtgtgtttg 564

                                                                       
Query: 365 tgagcatatgtgtctaatgagtgtatacatatgtgtgaatgcatctttatatgtgcatgt 424
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 tgagcatgtgtgtctaatgagtgtatgcatatgtgtgaatgcatctttatatgtgcatgt 624

                                                                       
Query: 425 ttgtttatgtgaatgtcaatgtattatgtgtatgtgcatgtatgtgggtgtcaatgtatg 484
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtttatgtgcatgtcaatgtattatgtgtatgtgcatgtatgtgggtgtcaatgtatg 684

                                                                       
Query: 485 tgcatatgtgcataaaggcctgaggtagccatctagtgttttccactatttctctctact 544
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 tgcatatgtgcataaaggcctgaggtagccatctagtgttttgcactatttctctctact 744

                                                                       
Query: 545 ttgtctttcaagactgaaccttgggctcaccagttaactggacaaggagtttcaataatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgtctttcaagactgaaccttgggctcaccagttaactggacaaggagtttcaataatc 804

                                                                       
Query: 605 cagatctcactatccgtcccagtatttgtgtcacatacttgtgcagatacacttggctac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagatctcactatccgtcccagtatttgtgtcacatacttgtgcagatacacttggctac 864

                                     
Query: 665 atgacaaaacttaagtgtcttgtcct 690
           ||||||||||||||||||||||||||
Sbjct: 865 atgacaaaacttaagtgtcttgtcct 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)